Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AACH36_RS18655 Genome accession   NZ_AP027939
Coordinates   4096695..4097936 (+) Length   413 a.a.
NCBI ID   WP_026456598.1    Uniprot ID   -
Organism   Aeromonas enteropelogenes strain VA111     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4091695..4102936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH36_RS18630 (VAWG006_36480) ampD 4092019..4092600 (-) 582 WP_338611356.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AACH36_RS18635 (VAWG006_36490) - 4092624..4093094 (+) 471 WP_338611357.1 retropepsin-like aspartic protease -
  AACH36_RS18640 (VAWG006_36500) nadC 4093098..4093955 (+) 858 WP_201941486.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AACH36_RS18645 (VAWG006_36510) - 4094330..4094767 (+) 438 WP_201941484.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AACH36_RS18650 (VAWG006_36520) pilB 4094767..4096473 (+) 1707 WP_042025094.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  AACH36_RS18655 (VAWG006_36530) pilC 4096695..4097936 (+) 1242 WP_026456598.1 type II secretion system F family protein Machinery gene
  AACH36_RS18660 (VAWG006_36540) pilD 4098003..4098878 (+) 876 WP_338611358.1 A24 family peptidase Machinery gene
  AACH36_RS18665 (VAWG006_36550) coaE 4098882..4099496 (+) 615 WP_223379351.1 dephospho-CoA kinase -
  AACH36_RS18670 (VAWG006_36560) zapD 4099534..4100256 (+) 723 WP_061476588.1 cell division protein ZapD -
  AACH36_RS18675 (VAWG006_36570) yacG 4100266..4100460 (+) 195 WP_026457308.1 DNA gyrase inhibitor YacG -
  AACH36_RS18680 (VAWG006_36580) mutT 4100523..4100918 (-) 396 WP_042071005.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45329.45 Da        Isoelectric Point: 9.8389

>NTDB_id=103008 AACH36_RS18655 WP_026456598.1 4096695..4097936(+) (pilC) [Aeromonas enteropelogenes strain VA111]
MATLTNKNNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGIVAADVETGTPMSEALRRHPRYFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVFFGGAA
LAIFLYVRAWRASQKVRDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=103008 AACH36_RS18655 WP_026456598.1 4096695..4097936(+) (pilC) [Aeromonas enteropelogenes strain VA111]
ATGGCAACGCTAACCAACAAGAATAATGCCCCCAAAAAAGTCTTCGCGTTTCGCTGGAGCGGGGTCAACCGCAAGGGCCA
GAAAGTCTCTGGTGAACTCCAGGCCGACAGCATCAACACCGTCAAGGCTGAGCTGCGCAAGCAGGGGGTCAACGTCACCA
AAGTGGCCAAGAAATCCCAGGGGCTGTTCTCCAAAGGCGGCGCCAAGATCAAACCGATGGATATCGCCATCGTCTCGCGC
CAGATCACCACCATGCTCTCCGCCGGTGTACCGCTGGTGCAGAGCCTGCAGATCATCGCCCGCAGCCATGAAAAAGCCTC
GATGCGCGAGCTGATGGGGATCGTCGCCGCCGACGTGGAGACCGGCACCCCGATGTCGGAGGCGCTGCGCCGCCATCCCC
GCTACTTTGATGCCCTCTACTGCGATCTGGTGGAGGCGGGCGAGCAGTCCGGCGCGCTGGAGACCATCTACGATCGCATC
GCCACCTATCGGGAAAAATCGGAAGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATCGTCGTCACCTCCATCCTGCTGCTGTTCGTCATCCCTCAATTCGAGGACATCTTCAAGAGCTTCGGCGCCGAGC
TGCCCATCTTCACCCAGTTCGTCATCGGCATTTCCCGCTTCATGCAGAACTGGTGGTATGTCTTCTTCGGCGGGGCGGCG
CTCGCCATCTTCCTCTATGTCCGCGCCTGGCGCGCTTCTCAAAAGGTAAGAGACAACACCGACAAGTTCGTGCTGACCAT
CCCGGTGGTCGGCATGATACTGCACAAGGCGGCCATGGCCCGCTTTGCCCGCACCCTCTCCACCACCTTCTCCGCCGGTA
TCCCGCTGGTGGATGCCCTGATCTCGGCGGCGGGGGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGGCGATCCGC
AACGAGGTGGTGGCGGGCATGCAGATCAACGTGGCGATGCGCACCGTGGATCTCTTCCCTGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCCGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTTGAACAGGAGGTGGATGATC
TGGTGGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTGATCGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGATGTCGTGGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.828

95.884

0.554
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

53.634

96.61

0.518
  pilC Legionella pneumophila strain ERS1305867

50.614

98.547

0.499
  pilC Vibrio cholerae strain A1552

47.118

96.61

0.455
  pilC Vibrio campbellii strain DS40M4

46.734

96.368

0.45
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38.5

96.852

0.373

Multiple sequence alignment