Detailed information NTG0103009

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AACH36_RS18660
• Genome accession: NZ_AP027939
• Coordinates: 4098003..4098878 (+)
• Length: 291 a.a.
• NCBI ID: WP_338611358.1
• Uniprot ID: -
• Organism: Aeromonas enteropelogenes strain VA111
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4093003..4103878

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AACH36_RS18640 (VAWG006_36500)	nadC	4093098..4093955 (+)	858	WP_201941486.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AACH36_RS18645 (VAWG006_36510)	-	4094330..4094767 (+)	438	WP_201941484.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
AACH36_RS18650 (VAWG006_36520)	pilB	4094767..4096473 (+)	1707	WP_042025094.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
AACH36_RS18655 (VAWG006_36530)	pilC	4096695..4097936 (+)	1242	WP_026456598.1	type II secretion system F family protein	Machinery gene
AACH36_RS18660 (VAWG006_36540)	pilD	4098003..4098878 (+)	876	WP_338611358.1	A24 family peptidase	Machinery gene
AACH36_RS18665 (VAWG006_36550)	coaE	4098882..4099496 (+)	615	WP_223379351.1	dephospho-CoA kinase	-
AACH36_RS18670 (VAWG006_36560)	zapD	4099534..4100256 (+)	723	WP_061476588.1	cell division protein ZapD	-
AACH36_RS18675 (VAWG006_36570)	yacG	4100266..4100460 (+)	195	WP_026457308.1	DNA gyrase inhibitor YacG	-
AACH36_RS18680 (VAWG006_36580)	mutT	4100523..4100918 (-)	396	WP_042071005.1	8-oxo-dGTP diphosphatase MutT	-
AACH36_RS18685 (VAWG006_36590)	secA	4101009..4103729 (-)	2721	WP_124238853.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32352.69 Da
• Isoelectric Point: 6.8285

>NTDB_id=103009 AACH36_RS18660 WP_338611358.1 4098003..4098878(+) (pilD) [Aeromonas enteropelogenes strain VA111]
MTLLIELAHGLPWLYLSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYHGYFETQTPNSDPAERYNLMVPRSACPHCGH
AITAVENIPLLSWLWLRGRCRECQAPISTRYPLVELLTALLSVAVATILTPGWGVLAALLLTWVLVTLTFIDLDKMLLPD
QLTLPLLWGGLLLNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPIILLLSS
LVGAIIGITLIALRKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLEMVL

Nucleotide

• Length: 876 bp

>NTDB_id=103009 AACH36_RS18660 WP_338611358.1 4098003..4098878(+) (pilD) [Aeromonas enteropelogenes strain VA111]
ATGACACTTCTTATCGAGCTGGCGCACGGCTTGCCCTGGCTCTATCTCTCCCTGGTCTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTCAACGTGGTGATCCACCGCCTCCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCACGGCTACTTCG
AGACACAAACGCCAAACAGCGATCCGGCTGAACGCTACAACCTGATGGTGCCGCGTTCCGCCTGCCCCCACTGCGGCCAT
GCCATCACGGCCGTCGAGAATATCCCGCTCCTGAGCTGGCTCTGGCTCAGGGGCCGTTGCCGGGAGTGTCAGGCCCCCAT
CTCGACCCGTTATCCCCTGGTGGAATTGCTGACAGCCCTGCTCTCGGTAGCGGTAGCCACGATCCTGACGCCGGGCTGGG
GTGTGCTGGCAGCCCTGCTGCTGACCTGGGTGCTGGTGACGCTCACCTTTATCGATCTGGACAAGATGCTGCTACCTGAC
CAGCTTACCCTGCCACTGCTGTGGGGCGGGTTGCTGCTCAATCTGGCAGGGGGATTCGTTCCGCTGGCCGACGCGGTGAT
CGGGGCCATGGCCGGCTATCTGGTACTGTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAGGGGATGGGAT
ATGGCGATTTCAAGCTGCTGGCGGCGCTCGGTGCCTGGCTGGGCTGGCAGTCCCTGCCCATCATACTGCTGCTCTCCTCC
CTGGTGGGCGCCATCATTGGCATCACGCTGATCGCGCTGCGCAAGCACCATCAGGGCAAGCCCATCCCCTTTGGCCCCTA
TCTGGCCATCGCGGGCTGGATCGCCCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTCGAAATGGTGCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.189	98.282	0.601
pilD	Vibrio campbellii strain DS40M4	56.597	98.969	0.56
pilD	Acinetobacter baumannii D1279779	53.763	95.876	0.515
pilD	Acinetobacter nosocomialis M2	53.763	95.876	0.515
pilD	Neisseria gonorrhoeae MS11	48.689	91.753	0.447