Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB5B06_RS10335 Genome accession   NZ_CP163419
Coordinates   1204941..1206206 (+) Length   421 a.a.
NCBI ID   WP_416049737.1    Uniprot ID   -
Organism   Cupriavidus basilensis strain BL-MT-10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1199941..1211206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5B06_RS10305 - 1200415..1200597 (+) 183 WP_193692090.1 hypothetical protein -
  AB5B06_RS10310 rpmA 1200575..1200835 (-) 261 WP_006162509.1 50S ribosomal protein L27 -
  AB5B06_RS10315 rplU 1200906..1201217 (-) 312 WP_006162510.1 50S ribosomal protein L21 -
  AB5B06_RS10320 ispB 1201790..1202719 (+) 930 WP_416050387.1 octaprenyl diphosphate synthase -
  AB5B06_RS10330 pilF 1203156..1204910 (+) 1755 WP_416049736.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB5B06_RS10335 pilC 1204941..1206206 (+) 1266 WP_416049737.1 type II secretion system F family protein Machinery gene
  AB5B06_RS10340 pilD 1206210..1207127 (+) 918 WP_416049738.1 prepilin peptidase Machinery gene
  AB5B06_RS10345 coaE 1207188..1207799 (+) 612 WP_416049739.1 dephospho-CoA kinase -
  AB5B06_RS10350 zapD 1208074..1208832 (+) 759 WP_150986821.1 cell division protein ZapD -
  AB5B06_RS10355 - 1208837..1209022 (+) 186 WP_043349767.1 DNA gyrase inhibitor YacG -
  AB5B06_RS10360 - 1209062..1209502 (-) 441 WP_183037048.1 NUDIX domain-containing protein -
  AB5B06_RS10365 - 1209499..1210401 (-) 903 WP_150986818.1 ATP-binding protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46273.48 Da        Isoelectric Point: 10.3143

>NTDB_id=1029598 AB5B06_RS10335 WP_416049737.1 1204941..1206206(+) (pilC) [Cupriavidus basilensis strain BL-MT-10]
MATRAPAAAARKAAAPKGKPGRKAPTQYLFEWEGKDRKGKAFSGELRAQSQAEVNATLRKQGLTVVKLKKRRAARGKKIT
QKDIAYFTRQLSTMLKAGIPLLQSIDIIARGHANPNFTQLLSEIRFDIESGSSMAQAFRRHPRYFDTLYCNLIDAGEQGG
ILDALLERLSLYMEKTIALKSQIKSAMIYPIAVLTVAFAVTVILMIFVIPAFKGVFSSFGANLPAPTLVVIAMSDFFVDH
WYLIIGAPIIGITMYIRGLKRSEKVQRASDRLLLKLPIFGSLFRKAVIARWTRTLATMFAAGTPLVESMESVAGAAGNWV
YYDATKEIEQSVRIGTSLTNAMQATHVFDSMVLQMTQIGEESGALDNMLLKVAEFYEREVDDAVAAISSLIEPLIIVILG
VLIGGMVVAMYLPIFKLGQVV

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=1029598 AB5B06_RS10335 WP_416049737.1 1204941..1206206(+) (pilC) [Cupriavidus basilensis strain BL-MT-10]
ATGGCGACACGCGCACCAGCCGCAGCCGCTCGCAAGGCGGCCGCGCCCAAGGGGAAACCAGGGCGTAAAGCGCCCACGCA
GTACCTGTTCGAGTGGGAAGGCAAGGACCGCAAGGGCAAGGCATTCTCGGGCGAGCTGCGCGCGCAGAGCCAGGCCGAGG
TCAATGCCACGCTGCGAAAGCAGGGGCTGACGGTCGTCAAGCTGAAAAAGCGGCGGGCCGCGCGCGGGAAGAAGATTACC
CAGAAGGACATCGCTTACTTCACGCGCCAGCTCTCCACCATGCTCAAGGCGGGCATCCCGCTGCTGCAATCGATCGACAT
CATCGCGCGCGGGCATGCCAACCCCAACTTCACCCAGCTGCTGTCCGAGATCCGCTTTGACATCGAATCCGGCAGCAGCA
TGGCGCAGGCCTTCCGCCGCCATCCGCGCTACTTCGACACGCTCTACTGCAACCTGATCGATGCCGGCGAGCAGGGCGGT
ATCCTGGACGCCCTGCTGGAGCGCTTGTCGCTCTACATGGAAAAGACCATCGCGCTGAAGAGCCAGATCAAGTCAGCCAT
GATCTACCCGATCGCCGTGCTGACCGTGGCCTTCGCGGTGACGGTCATCCTGATGATCTTCGTGATCCCGGCGTTCAAGG
GCGTGTTCTCCAGCTTCGGCGCCAACCTGCCGGCGCCGACCCTCGTTGTGATCGCCATGTCGGACTTCTTCGTCGACCAT
TGGTACCTGATCATCGGCGCGCCAATCATCGGCATCACGATGTACATACGCGGGCTAAAACGCTCGGAGAAGGTCCAGCG
CGCCAGCGACCGCCTGCTGCTCAAGCTGCCGATCTTCGGCTCGCTGTTCCGCAAGGCGGTGATCGCCCGCTGGACCCGCA
CGCTTGCCACCATGTTCGCCGCAGGCACGCCGCTGGTGGAGTCGATGGAATCGGTGGCCGGCGCCGCCGGCAACTGGGTC
TACTACGACGCCACCAAGGAAATCGAGCAATCGGTGCGCATCGGTACCAGCCTGACCAACGCCATGCAGGCAACCCATGT
CTTCGACAGCATGGTGTTGCAGATGACGCAGATCGGCGAGGAATCCGGCGCGCTGGACAATATGCTGCTGAAGGTGGCGG
AGTTCTACGAGCGCGAGGTCGATGACGCTGTCGCCGCCATCTCCAGCCTGATCGAGCCGCTGATCATCGTGATCCTGGGC
GTGCTGATTGGCGGCATGGTAGTGGCAATGTATCTTCCGATCTTTAAACTGGGACAGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

50.372

95.724

0.482
  pilG Neisseria gonorrhoeae MS11

50.382

93.349

0.47
  pilC Acinetobacter baumannii D1279779

48.642

96.2

0.468
  pilG Neisseria meningitidis 44/76-A

50.127

93.349

0.468
  pilC Legionella pneumophila strain ERS1305867

48.276

96.437

0.466
  pilC Acinetobacter baylyi ADP1

48.039

96.912

0.466
  pilC Vibrio campbellii strain DS40M4

39.216

96.912

0.38
  pilC Vibrio cholerae strain A1552

39.798

94.299

0.375
  pilC Thermus thermophilus HB27

37.26

98.812

0.368

Multiple sequence alignment