Detailed information NTG1029599

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB5B06_RS10340
• Genome accession: NZ_CP163419
• Coordinates: 1206210..1207127 (+)
• Length: 305 a.a.
• NCBI ID: WP_416049738.1
• Uniprot ID: -
• Organism: Cupriavidus basilensis strain BL-MT-10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1201210..1212127

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5B06_RS10320	ispB	1201790..1202719 (+)	930	WP_416050387.1	octaprenyl diphosphate synthase	-
AB5B06_RS10330	pilF	1203156..1204910 (+)	1755	WP_416049736.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB5B06_RS10335	pilC	1204941..1206206 (+)	1266	WP_416049737.1	type II secretion system F family protein	Machinery gene
AB5B06_RS10340	pilD	1206210..1207127 (+)	918	WP_416049738.1	prepilin peptidase	Machinery gene
AB5B06_RS10345	coaE	1207188..1207799 (+)	612	WP_416049739.1	dephospho-CoA kinase	-
AB5B06_RS10350	zapD	1208074..1208832 (+)	759	WP_150986821.1	cell division protein ZapD	-
AB5B06_RS10355	-	1208837..1209022 (+)	186	WP_043349767.1	DNA gyrase inhibitor YacG	-
AB5B06_RS10360	-	1209062..1209502 (-)	441	WP_183037048.1	NUDIX domain-containing protein	-
AB5B06_RS10365	-	1209499..1210401 (-)	903	WP_150986818.1	ATP-binding protein	-
AB5B06_RS10370	argJ	1210503..1211732 (-)	1230	WP_416049740.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 32251.09 Da
• Isoelectric Point: 6.3690

>NTDB_id=1029599 AB5B06_RS10340 WP_416049738.1 1206210..1207127(+) (pilD) [Cupriavidus basilensis strain BL-MT-10]
MWLFSADGASGAISSLAAPAQTIAELAALPPWFLVAAAALIGLLVGSFLNVVVHRLPRMMEHDEANYIASLRDDPIPHPE
PYNLMVPRSACPHCGHAIGALENIPVLSYLFLRGRCSSCAAPIGARYPLVEAGTAVLTALAAAHFGPTWQALAAIALIWA
LIALTLIDADTQLLPDQITLPLVWLGLLLNLGGLFAPLADAVIGAAAGYLLLWTVYWIFKLVRGKEGMGYGDFKLMGALG
AWFGWQALPALVLLSSVVGLVFALANIALRRQDRDTHFAFGPYIAGAGLLVLFFGPNVLPLGIAG

Nucleotide

• Length: 918 bp

>NTDB_id=1029599 AB5B06_RS10340 WP_416049738.1 1206210..1207127(+) (pilD) [Cupriavidus basilensis strain BL-MT-10]
ATGTGGCTGTTTTCCGCGGATGGCGCCAGTGGCGCGATTTCTTCACTGGCTGCCCCCGCGCAGACCATTGCCGAGCTGGC
GGCGCTGCCGCCCTGGTTCCTGGTCGCCGCCGCCGCGCTGATCGGCTTGCTGGTCGGCAGCTTCCTCAACGTGGTGGTGC
ACCGCCTGCCGCGCATGATGGAGCATGACGAAGCCAACTACATCGCGTCGCTGCGCGACGACCCGATCCCCCACCCCGAG
CCCTACAACCTGATGGTGCCGCGCTCGGCGTGCCCGCACTGCGGACACGCCATTGGCGCGCTCGAGAACATTCCGGTACT
GAGCTACCTGTTCCTGCGCGGGCGCTGCTCATCGTGCGCCGCGCCCATCGGCGCGCGCTATCCGCTGGTGGAAGCGGGCA
CCGCGGTGCTCACCGCGCTGGCCGCCGCGCACTTCGGCCCGACCTGGCAGGCTCTCGCGGCCATCGCCCTGATCTGGGCC
CTGATCGCCCTCACCCTGATCGACGCCGACACGCAGCTACTGCCCGACCAGATCACGCTGCCGCTGGTATGGCTGGGCCT
GCTGCTCAATCTCGGCGGGCTGTTCGCGCCGCTGGCGGATGCCGTGATCGGCGCGGCCGCCGGCTACCTGCTGCTGTGGA
CGGTGTACTGGATCTTCAAGCTGGTGCGGGGCAAGGAAGGCATGGGCTATGGCGACTTCAAGCTGATGGGCGCGCTGGGC
GCCTGGTTCGGCTGGCAGGCCCTGCCGGCGCTGGTGCTGCTCTCCTCCGTGGTGGGGCTGGTTTTCGCGCTTGCCAATAT
CGCGCTGCGCCGTCAGGATCGCGATACGCACTTCGCCTTCGGCCCTTATATCGCCGGAGCCGGGCTGCTTGTGCTGTTCT
TTGGGCCCAATGTGCTGCCGCTGGGCATTGCGGGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (156-264)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (40-145)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.763	91.475	0.492
pilD	Vibrio campbellii strain DS40M4	51.799	91.148	0.472
pilD	Neisseria gonorrhoeae MS11	49.265	89.18	0.439
pilD	Acinetobacter baumannii D1279779	46.35	89.836	0.416
pilD	Acinetobacter nosocomialis M2	46.35	89.836	0.416