Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB3464_RS21065 Genome accession   NZ_CP162519
Coordinates   4703735..4704952 (-) Length   405 a.a.
NCBI ID   WP_397457934.1    Uniprot ID   -
Organism   Pseudomonas asplenii strain UPB 526     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4698735..4709952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3464_RS21030 (AB3464_20935) - 4699953..4700126 (-) 174 WP_010451874.1 DUF3094 family protein -
  AB3464_RS21035 (AB3464_20940) - 4700297..4700926 (-) 630 WP_010451875.1 DUF1780 domain-containing protein -
  AB3464_RS21040 (AB3464_20945) - 4701046..4701744 (+) 699 WP_397457932.1 energy-coupling factor ABC transporter permease -
  AB3464_RS21045 (AB3464_20950) - 4701812..4702027 (+) 216 WP_397457933.1 hypothetical protein -
  AB3464_RS21050 (AB3464_20955) yacG 4702039..4702242 (-) 204 WP_010451880.1 DNA gyrase inhibitor YacG -
  AB3464_RS21055 (AB3464_20960) coaE 4702239..4702862 (-) 624 WP_019361534.1 dephospho-CoA kinase -
  AB3464_RS21060 (AB3464_20965) pilD 4702862..4703731 (-) 870 WP_019361533.1 A24 family peptidase Machinery gene
  AB3464_RS21065 (AB3464_20970) pilC 4703735..4704952 (-) 1218 WP_397457934.1 type II secretion system F family protein Machinery gene
  AB3464_RS21070 (AB3464_20975) pilB 4704956..4706656 (-) 1701 WP_397459838.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB3464_RS21075 (AB3464_20980) pilA2 4706881..4707300 (+) 420 WP_397457935.1 pilin Machinery gene
  AB3464_RS21080 (AB3464_20985) - 4707380..4708795 (+) 1416 WP_397457936.1 O-antigen ligase family protein -
  AB3464_RS21090 (AB3464_20995) - 4709031..4709717 (-) 687 WP_397457937.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44240.09 Da        Isoelectric Point: 10.1385

>NTDB_id=1026856 AB3464_RS21065 WP_397457934.1 4703735..4704952(-) (pilC) [Pseudomonas asplenii strain UPB 526]
MATKAKKISVYAWEGTDKKGTKMTGELSGHNPALVKAQLRRQGINPGRVRKKGVSLFSKGKRIKPLDIALFTRQMATMMK
AGVPLLQSFDIISEGFENPNMRKLVDEIKQEVAAGNSFATSLRKKPEYFDELYCNLVDAGEQAGALESLLSRVATYKEKT
EALKAKIKKAMTYPIAVVVVAIVVSGILLIKVVPQFQSIFASFGADLPAFTLMVIGLSNLLQDWWLIVIGALVAVAFAFK
RTYKNSEKFRDWMDRALLKLPIIGQLLYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFRNAVNRVKQDVSTGM
QLNFSMRATGVFPSMATQMTSIGEESGALDDMLEKVANYYEAEVDNMVDSLTSLMEPIIMAVLGVIVGGLVIAMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1026856 AB3464_RS21065 WP_397457934.1 4703735..4704952(-) (pilC) [Pseudomonas asplenii strain UPB 526]
ATGGCCACAAAGGCGAAAAAAATCAGTGTTTACGCCTGGGAAGGTACCGATAAAAAAGGTACGAAGATGACCGGCGAGCT
GAGCGGCCACAACCCGGCGCTGGTAAAGGCACAATTGCGAAGACAAGGAATCAACCCAGGCCGGGTAAGGAAAAAGGGCG
TCTCGCTATTCAGCAAGGGCAAGCGTATCAAGCCTCTGGACATTGCCCTGTTCACCCGCCAGATGGCGACCATGATGAAA
GCCGGCGTACCGCTGCTGCAGTCCTTCGATATCATTTCCGAAGGTTTCGAAAACCCGAACATGCGCAAGCTGGTGGACGA
GATCAAGCAGGAAGTCGCGGCGGGTAATAGTTTCGCAACGTCACTGCGCAAGAAACCGGAATACTTCGATGAGCTGTATT
GCAACCTCGTCGATGCCGGTGAACAGGCCGGCGCCCTCGAAAGCCTGCTTTCGCGGGTAGCGACTTACAAGGAAAAAACC
GAAGCGCTCAAGGCCAAGATCAAGAAAGCCATGACCTATCCCATTGCGGTGGTGGTGGTGGCGATTGTCGTGTCCGGAAT
TCTGCTGATCAAAGTCGTACCGCAATTCCAATCGATTTTCGCCAGTTTTGGCGCTGACCTACCCGCTTTCACATTGATGG
TGATCGGTCTTTCCAATCTCCTTCAAGACTGGTGGCTGATTGTTATCGGCGCGTTGGTGGCTGTAGCGTTCGCCTTCAAG
CGCACCTATAAAAACTCGGAAAAGTTTCGCGACTGGATGGACCGGGCACTGCTGAAGCTGCCCATCATCGGACAATTGCT
CTACAAATCGGCCGTGGCCCGCTTCGCCCGAACGCTTTCGACCACTTTCGCAGCAGGCGTGCCACTGGTTGAGGCCCTGG
ACTCAGTCGCCGGCGCCACTGGCAATGTTGTCTTCAGAAACGCGGTCAATCGAGTGAAGCAAGATGTATCCACTGGCATG
CAGCTGAATTTTTCCATGCGCGCGACCGGCGTATTCCCCAGCATGGCAACACAGATGACTTCTATCGGCGAAGAATCTGG
CGCCCTGGACGACATGCTCGAAAAGGTCGCAAACTACTACGAAGCTGAAGTCGACAATATGGTCGACAGCCTTACCAGCC
TGATGGAACCCATTATCATGGCCGTACTGGGCGTCATCGTCGGCGGCCTGGTGATCGCCATGTACCTGCCCATCTTCAAG
CTTGGCCAAGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

76.79

100

0.768
  pilC Acinetobacter baylyi ADP1

59.36

100

0.595
  pilC Acinetobacter baumannii D1279779

59.653

99.753

0.595
  pilC Legionella pneumophila strain ERS1305867

54.04

97.778

0.528
  pilG Neisseria meningitidis 44/76-A

44.335

100

0.444
  pilG Neisseria gonorrhoeae MS11

44.03

99.259

0.437
  pilC Vibrio cholerae strain A1552

42.963

100

0.43
  pilC Vibrio campbellii strain DS40M4

41.626

100

0.417
  pilC Thermus thermophilus HB27

38.958

99.506

0.388

Multiple sequence alignment