Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   AB4J90_RS17515 Genome accession   NZ_CP162496
Coordinates   3413981..3414328 (-) Length   115 a.a.
NCBI ID   WP_008880386.1    Uniprot ID   A4IT00
Organism   Geobacillus thermodenitrificans strain BIM B-1973     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3408981..3419328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4J90_RS17495 (AB4J90_17495) - 3410534..3411868 (-) 1335 WP_368493177.1 peptidoglycan-binding protein -
  AB4J90_RS17500 (AB4J90_17500) - 3411902..3412417 (-) 516 Protein_3376 peptidoglycan-binding protein -
  AB4J90_RS17505 (AB4J90_17505) - 3412727..3413227 (-) 501 WP_008880384.1 hypothetical protein -
  AB4J90_RS17510 (AB4J90_17510) - 3413441..3413851 (+) 411 WP_029761384.1 helix-turn-helix domain-containing protein -
  AB4J90_RS17515 (AB4J90_17515) ssbB 3413981..3414328 (-) 348 WP_008880386.1 single-stranded DNA-binding protein Machinery gene
  AB4J90_RS17520 (AB4J90_17520) - 3414613..3415053 (+) 441 WP_108437967.1 YwpF-like family protein -
  AB4J90_RS17525 (AB4J90_17525) - 3415240..3415911 (-) 672 WP_008880388.1 class D sortase -
  AB4J90_RS17530 (AB4J90_17530) - 3415918..3416886 (-) 969 WP_081157468.1 processed acidic surface protein -
  AB4J90_RS17535 (AB4J90_17535) - 3416996..3418372 (-) 1377 WP_328191379.1 aspartate kinase -
  AB4J90_RS17540 (AB4J90_17540) - 3418523..3418957 (-) 435 WP_008880391.1 DUF1284 domain-containing protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12957.77 Da        Isoelectric Point: 8.5040

>NTDB_id=1026543 AB4J90_RS17515 WP_008880386.1 3413981..3414328(-) (ssbB) [Geobacillus thermodenitrificans strain BIM B-1973]
MINQVVLVGRLTKDPELRYTAEGTAVTTVILAVARNFRNAEGGIDADFVPCVLWRKTAEHTAHYCQKGSMVAVTGRIQTR
RYENKDGQRVYVTEVVADSVQFLHSGKVREWPEHV

Nucleotide


Download         Length: 348 bp        

>NTDB_id=1026543 AB4J90_RS17515 WP_008880386.1 3413981..3414328(-) (ssbB) [Geobacillus thermodenitrificans strain BIM B-1973]
ATGATCAATCAAGTCGTACTTGTCGGCCGATTGACGAAGGATCCAGAGCTTCGTTACACGGCCGAGGGGACGGCCGTTAC
AACCGTGATCTTGGCGGTAGCGAGAAATTTTCGCAACGCGGAAGGGGGGATTGATGCTGACTTCGTTCCGTGTGTCCTAT
GGCGGAAAACGGCAGAGCATACTGCCCATTATTGCCAAAAAGGATCGATGGTGGCGGTAACGGGTAGAATCCAGACGCGC
CGTTATGAAAACAAAGACGGCCAGCGCGTCTATGTGACGGAAGTCGTAGCCGATTCAGTTCAGTTTCTCCACTCCGGCAA
AGTGCGAGAATGGCCGGAGCACGTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4IT00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.273

95.652

0.643
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.5

90.435

0.565
  ssb Latilactobacillus sakei subsp. sakei 23K

60.952

91.304

0.557
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.368

99.13

0.47
  ssbA Streptococcus mutans UA159

44.737

99.13

0.443
  ssbB/cilA Streptococcus mitis NCTC 12261

43.86

99.13

0.435
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.86

99.13

0.435
  ssbB/cilA Streptococcus mitis SK321

42.982

99.13

0.426
  ssbB/cilA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  ssbB/cilA Streptococcus pneumoniae D39

42.982

99.13

0.426
  ssbB/cilA Streptococcus pneumoniae R6

42.982

99.13

0.426
  ssbB Lactococcus lactis subsp. cremoris KW2

41.346

90.435

0.374

Multiple sequence alignment