Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   AB2J53_RS24205 Genome accession   NZ_CP162020
Coordinates   4816495..4816863 (-) Length   122 a.a.
NCBI ID   WP_048007974.1    Uniprot ID   -
Organism   Cytobacillus firmus strain A4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4811495..4821863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2J53_RS24185 (AB2J53_24185) - 4812334..4815153 (+) 2820 WP_197217669.1 DEAD/DEAH box helicase -
  AB2J53_RS24190 (AB2J53_24190) - 4815161..4815547 (-) 387 WP_163142372.1 hypothetical protein -
  AB2J53_RS24195 (AB2J53_24195) - 4815753..4816151 (+) 399 WP_368297644.1 helix-turn-helix domain-containing protein -
  AB2J53_RS24200 (AB2J53_24200) - 4816298..4816489 (-) 192 WP_346769944.1 hypothetical protein -
  AB2J53_RS24205 (AB2J53_24205) ssbB 4816495..4816863 (-) 369 WP_048007974.1 single-stranded DNA-binding protein Machinery gene
  AB2J53_RS24210 (AB2J53_24210) - 4817129..4817587 (+) 459 WP_197217663.1 YwpF-like family protein -
  AB2J53_RS24215 (AB2J53_24215) - 4817607..4817897 (-) 291 WP_048007972.1 hypothetical protein -
  AB2J53_RS24220 (AB2J53_24220) fabZ 4818032..4818460 (-) 429 WP_048007971.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AB2J53_RS24225 (AB2J53_24225) - 4818584..4818853 (-) 270 WP_159346421.1 DNA-directed RNA polymerase subunit beta -
  AB2J53_RS24230 (AB2J53_24230) - 4818872..4819699 (-) 828 WP_197217661.1 flagellar hook-basal body protein -
  AB2J53_RS24235 (AB2J53_24235) - 4819734..4820573 (-) 840 WP_368297645.1 flagellar hook-basal body protein -
  AB2J53_RS24240 (AB2J53_24240) - 4820779..4821780 (-) 1002 WP_248349981.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 14141.16 Da        Isoelectric Point: 9.7403

>NTDB_id=1023641 AB2J53_RS24205 WP_048007974.1 4816495..4816863(-) (ssbB) [Cytobacillus firmus strain A4]
MINQVTLVGRLTKDPELKRTQEGIPVTNVTLAVNRQYRNHKGEIDADFVQCTLWKKTAENTSQYCRKGTLIGVTGRIQTR
HYDNQEKKRIYVTEVVAESVRFLERKKTEDISVTVTKEELPF

Nucleotide


Download         Length: 369 bp        

>NTDB_id=1023641 AB2J53_RS24205 WP_048007974.1 4816495..4816863(-) (ssbB) [Cytobacillus firmus strain A4]
ATGATCAATCAAGTGACCTTGGTCGGAAGGCTGACAAAGGATCCTGAGCTGAAAAGGACACAGGAGGGAATTCCGGTAAC
AAATGTGACACTGGCAGTTAACCGCCAGTACCGCAACCACAAGGGTGAAATCGATGCAGATTTTGTGCAGTGCACTTTAT
GGAAGAAAACGGCTGAGAATACATCTCAGTATTGCCGGAAAGGAACCCTGATTGGAGTAACCGGGCGGATCCAGACAAGG
CATTATGATAATCAGGAAAAGAAGCGCATTTACGTAACAGAGGTAGTAGCGGAATCCGTCCGTTTTCTTGAACGGAAGAA
GACAGAGGACATTTCGGTGACTGTAACCAAGGAGGAGCTTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.385

89.344

0.557
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.075

87.705

0.492
  ssb Latilactobacillus sakei subsp. sakei 23K

50

88.525

0.443
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.152

100

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

38.636

100

0.418
  ssbB/cilA Streptococcus mitis NCTC 12261

38.636

100

0.418
  ssbB/cilA Streptococcus pneumoniae Rx1

37.879

100

0.41
  ssbB/cilA Streptococcus pneumoniae D39

37.879

100

0.41
  ssbB/cilA Streptococcus pneumoniae R6

37.879

100

0.41
  ssbB/cilA Streptococcus mitis SK321

37.879

100

0.41
  ssbA Streptococcus mutans UA159

37.879

100

0.41
  ssbB Lactococcus lactis subsp. cremoris KW2

42.991

87.705

0.377

Multiple sequence alignment