Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   AB2M34_RS02600 Genome accession   NZ_CP161903
Coordinates   484177..484518 (+) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain DYJ24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 479177..489518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS02560 (AB2M34_02560) rapD 479307..480371 (-) 1065 WP_014481149.1 aspartate phosphatase RapD -
  AB2M34_RS02565 (AB2M34_02565) fabZ 480563..480988 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AB2M34_RS02570 (AB2M34_02570) mscL 481061..481456 (+) 396 WP_072592613.1 large conductance mechanosensitive channel protein MscL -
  AB2M34_RS02575 (AB2M34_02575) ywpD 481504..482340 (-) 837 WP_014481147.1 sensor histidine kinase -
  AB2M34_RS02580 (AB2M34_02580) - 482269..482613 (+) 345 WP_103330051.1 prealbumin-like fold domain-containing protein -
  AB2M34_RS02585 (AB2M34_02585) - 482600..482992 (+) 393 Protein_512 class A sortase -
  AB2M34_RS02590 (AB2M34_02590) ywpF 483132..483542 (-) 411 WP_014481144.1 YwpF-like family protein -
  AB2M34_RS02595 (AB2M34_02595) ywpG 483717..484100 (+) 384 WP_015714843.1 DynA interaction protein YwpG -
  AB2M34_RS02600 (AB2M34_02600) ssbB 484177..484518 (+) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  AB2M34_RS02605 (AB2M34_02605) glcR 484742..485518 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  AB2M34_RS02610 (AB2M34_02610) ywpJ 485524..486381 (+) 858 WP_041334769.1 phosphatase YwpJ -
  AB2M34_RS02615 (AB2M34_02615) hepAB 486507..489275 (-) 2769 WP_014481139.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=1023040 AB2M34_RS02600 WP_003227798.1 484177..484518(+) (ssbB) [Bacillus subtilis strain DYJ24]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=1023040 AB2M34_RS02600 WP_003227798.1 484177..484518(+) (ssbB) [Bacillus subtilis strain DYJ24]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment