Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC/cglC   Type   Machinery gene
Locus tag   ABZ559_RS11735 Genome accession   NZ_CP160400
Coordinates   2354870..2355202 (-) Length   110 a.a.
NCBI ID   WP_018376803.1    Uniprot ID   -
Organism   Streptococcus sp. ZY19097     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2349870..2360202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZ559_RS11690 (ABZ559_11690) - 2349965..2350420 (-) 456 WP_277290533.1 CAAX protease -
  ABZ559_RS11695 (ABZ559_11695) - 2350417..2350611 (-) 195 WP_273414269.1 hypothetical protein -
  ABZ559_RS11700 (ABZ559_11700) - 2350623..2350820 (-) 198 WP_018376810.1 helix-turn-helix transcriptional regulator -
  ABZ559_RS11705 (ABZ559_11705) - 2351210..2352403 (-) 1194 WP_367006522.1 acetate kinase -
  ABZ559_RS11710 (ABZ559_11710) comYH 2352455..2353411 (-) 957 WP_018376808.1 class I SAM-dependent methyltransferase Machinery gene
  ABZ559_RS11715 (ABZ559_11715) comYG 2353465..2353821 (-) 357 WP_367006523.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABZ559_RS11720 (ABZ559_11720) comYF 2353799..2354260 (-) 462 WP_367006524.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABZ559_RS11725 (ABZ559_11725) comGE 2354220..2354510 (-) 291 WP_367006526.1 competence type IV pilus minor pilin ComGE -
  ABZ559_RS11730 (ABZ559_11730) comYD 2354467..2354916 (-) 450 WP_277290537.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABZ559_RS11735 (ABZ559_11735) comGC/cglC 2354870..2355202 (-) 333 WP_018376803.1 competence type IV pilus major pilin ComGC Machinery gene
  ABZ559_RS11740 (ABZ559_11740) comYB 2355203..2356246 (-) 1044 WP_367006528.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABZ559_RS11745 (ABZ559_11745) comYA 2356170..2357111 (-) 942 WP_018376801.1 competence type IV pilus ATPase ComGA Machinery gene
  ABZ559_RS11750 (ABZ559_11750) - 2357206..2357571 (-) 366 WP_273415187.1 DUF1033 family protein -
  ABZ559_RS11755 (ABZ559_11755) - 2357705..2358556 (-) 852 WP_367006530.1 ABC transporter ATP-binding protein -
  ABZ559_RS11760 (ABZ559_11760) - 2358559..2359239 (-) 681 WP_367006532.1 hypothetical protein -
  ABZ559_RS11765 (ABZ559_11765) - 2359254..2359760 (-) 507 WP_367006534.1 hypothetical protein -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 12193.23 Da        Isoelectric Point: 9.9218

>NTDB_id=1020959 ABZ559_RS11735 WP_018376803.1 2354870..2355202(-) (comGC/cglC) [Streptococcus sp. ZY19097]
MKLLWRKLQKKAAPAFTLVEMLVVLLIISVLMLLFVPNLTKQKDAINEKGNAAVVKVVESQAELYELNNDSTATLSKLVS
DGSITAKQQKAYNDYYANPPKDAPSRQVSN

Nucleotide


Download         Length: 333 bp        

>NTDB_id=1020959 ABZ559_RS11735 WP_018376803.1 2354870..2355202(-) (comGC/cglC) [Streptococcus sp. ZY19097]
ATGAAATTATTATGGAGAAAATTACAGAAAAAGGCTGCACCCGCTTTCACTCTGGTAGAAATGTTGGTCGTCCTTCTTAT
CATCAGCGTTCTCATGTTGCTTTTTGTACCTAATTTGACCAAGCAAAAAGATGCTATCAACGAAAAAGGCAATGCAGCAG
TAGTTAAAGTGGTAGAAAGTCAAGCGGAGCTTTATGAGCTCAATAATGATTCTACTGCAACGTTGAGCAAGCTAGTGTCA
GATGGTAGTATCACTGCTAAACAACAAAAGGCTTACAATGATTATTATGCCAATCCTCCAAAAGATGCTCCAAGTCGTCA
AGTATCAAACTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(15-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus mitis SK321

70.103

88.182

0.618
  comGC/cglC Streptococcus pneumoniae TIGR4

60.909

100

0.609
  comYC Streptococcus gordonii str. Challis substr. CH1

71.739

83.636

0.6
  comGC/cglC Streptococcus mitis NCTC 12261

68.041

88.182

0.6
  comYC Streptococcus mutans UA140

61.905

95.455

0.591
  comYC Streptococcus mutans UA159

61.905

95.455

0.591
  comGC/cglC Streptococcus pneumoniae D39

66.667

87.273

0.582
  comGC/cglC Streptococcus pneumoniae R6

66.667

87.273

0.582
  comGC/cglC Streptococcus pneumoniae Rx1

66.667

87.273

0.582
  comGC Lactococcus lactis subsp. cremoris KW2

59.794

88.182

0.527
  comYC Streptococcus suis isolate S10

64.368

79.091

0.509

Multiple sequence alignment