Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   ABZ559_RS11740 Genome accession   NZ_CP160400
Coordinates   2355203..2356246 (-) Length   347 a.a.
NCBI ID   WP_367006528.1    Uniprot ID   -
Organism   Streptococcus sp. ZY19097     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2350203..2361246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZ559_RS11695 (ABZ559_11695) - 2350417..2350611 (-) 195 WP_273414269.1 hypothetical protein -
  ABZ559_RS11700 (ABZ559_11700) - 2350623..2350820 (-) 198 WP_018376810.1 helix-turn-helix transcriptional regulator -
  ABZ559_RS11705 (ABZ559_11705) - 2351210..2352403 (-) 1194 WP_367006522.1 acetate kinase -
  ABZ559_RS11710 (ABZ559_11710) comYH 2352455..2353411 (-) 957 WP_018376808.1 class I SAM-dependent methyltransferase Machinery gene
  ABZ559_RS11715 (ABZ559_11715) comYG 2353465..2353821 (-) 357 WP_367006523.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABZ559_RS11720 (ABZ559_11720) comYF 2353799..2354260 (-) 462 WP_367006524.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABZ559_RS11725 (ABZ559_11725) comGE 2354220..2354510 (-) 291 WP_367006526.1 competence type IV pilus minor pilin ComGE -
  ABZ559_RS11730 (ABZ559_11730) comYD 2354467..2354916 (-) 450 WP_277290537.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABZ559_RS11735 (ABZ559_11735) comGC/cglC 2354870..2355202 (-) 333 WP_018376803.1 competence type IV pilus major pilin ComGC Machinery gene
  ABZ559_RS11740 (ABZ559_11740) comYB 2355203..2356246 (-) 1044 WP_367006528.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABZ559_RS11745 (ABZ559_11745) comYA 2356170..2357111 (-) 942 WP_018376801.1 competence type IV pilus ATPase ComGA Machinery gene
  ABZ559_RS11750 (ABZ559_11750) - 2357206..2357571 (-) 366 WP_273415187.1 DUF1033 family protein -
  ABZ559_RS11755 (ABZ559_11755) - 2357705..2358556 (-) 852 WP_367006530.1 ABC transporter ATP-binding protein -
  ABZ559_RS11760 (ABZ559_11760) - 2358559..2359239 (-) 681 WP_367006532.1 hypothetical protein -
  ABZ559_RS11765 (ABZ559_11765) - 2359254..2359760 (-) 507 WP_367006534.1 hypothetical protein -
  ABZ559_RS11770 (ABZ559_11770) - 2359750..2360391 (-) 642 WP_367006536.1 hypothetical protein -
  ABZ559_RS11775 (ABZ559_11775) - 2360384..2361031 (-) 648 WP_367006538.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39734.29 Da        Isoelectric Point: 9.3784

>NTDB_id=1020960 ABZ559_RS11740 WP_367006528.1 2355203..2356246(-) (comYB) [Streptococcus sp. ZY19097]
MGKLKALLMTDISVLRRQKSKKLPLKKQRKLLQLFNNLMESGFNLTEMVDFLRRSQLLADEYTDCMQESLLSGLGMAEML
AKLGFSDTVVTQLALADVHGNTRKSLQKIESYLIEVFKVRKKVIEVATYPLILLTFLILIMLGLKNYLLPQLQGGNFATK
IINHFPLIFLGSFALLVVTILAIYLYSRRLSRIRLMSYMSCLPVFGVYVRLYLTAYYAREWGNLIGQGIELAQIVQLMQT
QKARLFQEIGEDMEIGLLSGREFHQKVLDYSFFNKELGLIIEYGEVKSKLGSELDVYAEECWESFFNKLTQATQLIQPLV
FVFVALVIVMIYAAMLLPMYQNMGGTF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1020960 ABZ559_RS11740 WP_367006528.1 2355203..2356246(-) (comYB) [Streptococcus sp. ZY19097]
ATGGGCAAATTGAAAGCCTTGCTCATGACGGACATATCAGTGCTGCGCAGGCAAAAATCGAAAAAATTACCGCTTAAGAA
GCAACGTAAACTACTTCAGCTTTTCAACAACTTGATGGAAAGTGGTTTTAATTTGACAGAAATGGTTGATTTTCTGAGAC
GTAGTCAGCTCTTGGCCGACGAGTACACAGACTGTATGCAGGAAAGTTTATTGAGTGGGCTTGGAATGGCTGAAATGTTA
GCAAAATTGGGCTTCTCAGACACTGTAGTCACCCAGCTGGCCTTGGCCGATGTTCATGGTAACACCAGAAAAAGTTTGCA
AAAAATAGAAAGCTATTTGATTGAGGTTTTTAAGGTTAGAAAAAAAGTGATTGAAGTGGCAACTTATCCCCTAATTCTGT
TGACATTTCTGATTTTGATTATGCTGGGATTAAAAAATTATCTGCTGCCGCAGTTGCAAGGTGGAAATTTTGCAACCAAG
ATAATCAATCATTTTCCGCTGATTTTTCTAGGGAGTTTTGCTTTATTAGTAGTTACGATCCTTGCTATTTACCTTTACAG
TAGGAGATTATCGCGTATCCGTTTAATGAGCTATATGAGTTGTTTGCCAGTTTTTGGGGTGTATGTCCGTCTTTACCTGA
CAGCTTATTATGCGCGTGAGTGGGGGAACCTTATCGGGCAAGGTATTGAGCTGGCACAAATTGTTCAGCTAATGCAGACT
CAAAAAGCTCGGCTATTTCAAGAAATTGGCGAAGACATGGAAATTGGGCTACTATCTGGCAGAGAGTTTCATCAGAAGGT
TTTAGATTATTCTTTTTTCAACAAAGAACTGGGACTTATCATCGAGTATGGTGAAGTGAAGTCAAAATTGGGTAGTGAAC
TTGATGTTTATGCTGAGGAATGCTGGGAAAGCTTTTTTAATAAACTAACTCAGGCAACACAACTGATACAGCCATTGGTT
TTTGTATTTGTTGCTTTAGTGATTGTTATGATTTATGCGGCAATGCTTTTGCCGATGTACCAAAATATGGGAGGAACATT
TTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(32-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

65.089

97.406

0.634
  comYB Streptococcus mutans UA159

65.089

97.406

0.634
  comYB Streptococcus gordonii str. Challis substr. CH1

57.988

97.406

0.565
  comGB/cglB Streptococcus mitis NCTC 12261

56.083

97.118

0.545
  comGB/cglB Streptococcus mitis SK321

55.786

97.118

0.542
  comGB/cglB Streptococcus pneumoniae Rx1

55.49

97.118

0.539
  comGB/cglB Streptococcus pneumoniae D39

55.49

97.118

0.539
  comGB/cglB Streptococcus pneumoniae R6

55.49

97.118

0.539
  comGB/cglB Streptococcus pneumoniae TIGR4

55.49

97.118

0.539
  comGB Lactococcus lactis subsp. cremoris KW2

53.709

97.118

0.522

Multiple sequence alignment