Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   ABZ559_RS11720 Genome accession   NZ_CP160400
Coordinates   2353799..2354260 (-) Length   153 a.a.
NCBI ID   WP_367006524.1    Uniprot ID   -
Organism   Streptococcus sp. ZY19097     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2348799..2359260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZ559_RS11685 (ABZ559_11685) - 2349296..2349949 (-) 654 WP_367006520.1 type II CAAX endopeptidase family protein -
  ABZ559_RS11690 (ABZ559_11690) - 2349965..2350420 (-) 456 WP_277290533.1 CAAX protease -
  ABZ559_RS11695 (ABZ559_11695) - 2350417..2350611 (-) 195 WP_273414269.1 hypothetical protein -
  ABZ559_RS11700 (ABZ559_11700) - 2350623..2350820 (-) 198 WP_018376810.1 helix-turn-helix transcriptional regulator -
  ABZ559_RS11705 (ABZ559_11705) - 2351210..2352403 (-) 1194 WP_367006522.1 acetate kinase -
  ABZ559_RS11710 (ABZ559_11710) comYH 2352455..2353411 (-) 957 WP_018376808.1 class I SAM-dependent methyltransferase Machinery gene
  ABZ559_RS11715 (ABZ559_11715) comYG 2353465..2353821 (-) 357 WP_367006523.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABZ559_RS11720 (ABZ559_11720) comYF 2353799..2354260 (-) 462 WP_367006524.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABZ559_RS11725 (ABZ559_11725) comGE 2354220..2354510 (-) 291 WP_367006526.1 competence type IV pilus minor pilin ComGE -
  ABZ559_RS11730 (ABZ559_11730) comYD 2354467..2354916 (-) 450 WP_277290537.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABZ559_RS11735 (ABZ559_11735) comGC/cglC 2354870..2355202 (-) 333 WP_018376803.1 competence type IV pilus major pilin ComGC Machinery gene
  ABZ559_RS11740 (ABZ559_11740) comYB 2355203..2356246 (-) 1044 WP_367006528.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABZ559_RS11745 (ABZ559_11745) comYA 2356170..2357111 (-) 942 WP_018376801.1 competence type IV pilus ATPase ComGA Machinery gene
  ABZ559_RS11750 (ABZ559_11750) - 2357206..2357571 (-) 366 WP_273415187.1 DUF1033 family protein -
  ABZ559_RS11755 (ABZ559_11755) - 2357705..2358556 (-) 852 WP_367006530.1 ABC transporter ATP-binding protein -
  ABZ559_RS11760 (ABZ559_11760) - 2358559..2359239 (-) 681 WP_367006532.1 hypothetical protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17219.79 Da        Isoelectric Point: 8.2453

>NTDB_id=1020957 ABZ559_RS11720 WP_367006524.1 2353799..2354260(-) (comYF) [Streptococcus sp. ZY19097]
MKMAELFCRCQKIKLAAFSLLECLVALFVLSGSMLVYQGLTKSVSANVHYLSDNDNGNWLLFSQQLRSELETSHLDKVEN
NKLYVTKSGQTLAFGQSKADDFRKTNADGRGYQPMLYGLKSSAISQKENMIQINLTFKNGLERSLIYAFEEAV

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1020957 ABZ559_RS11720 WP_367006524.1 2353799..2354260(-) (comYF) [Streptococcus sp. ZY19097]
ATGAAAATGGCAGAATTGTTTTGCAGGTGTCAAAAAATTAAGCTAGCCGCCTTTAGTTTACTTGAGTGTCTAGTGGCCCT
TTTTGTCCTATCAGGTTCCATGCTGGTCTACCAAGGTCTGACCAAGTCAGTTTCAGCTAATGTTCATTATTTATCTGATA
ATGATAATGGCAATTGGTTGCTTTTTTCTCAGCAACTGCGATCTGAGTTAGAGACTAGCCATTTGGATAAGGTTGAAAAC
AATAAACTGTATGTAACAAAATCGGGGCAAACCTTGGCTTTTGGGCAGTCTAAGGCAGATGATTTTAGAAAAACAAACGC
TGATGGCCGTGGTTATCAACCCATGCTGTATGGGCTGAAAAGCTCTGCAATCTCCCAAAAAGAAAACATGATTCAAATTA
ATCTGACGTTTAAAAATGGCCTAGAGAGGAGTCTAATTTATGCTTTTGAAGAGGCAGTCTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(49-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

61.429

91.503

0.562
  comYF Streptococcus mutans UA159

60.714

91.503

0.556
  comGF Lactococcus lactis subsp. cremoris KW2

47.518

92.157

0.438
  comGF/cglF Streptococcus pneumoniae Rx1

47.101

90.196

0.425
  comGF/cglF Streptococcus pneumoniae D39

47.101

90.196

0.425
  comGF/cglF Streptococcus pneumoniae R6

47.101

90.196

0.425
  comGF/cglF Streptococcus pneumoniae TIGR4

47.101

90.196

0.425
  comGF/cglF Streptococcus mitis NCTC 12261

46.043

90.85

0.418
  comGF/cglF Streptococcus mitis SK321

44.604

90.85

0.405

Multiple sequence alignment