Detailed information NTG1020958

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: ABZ559_RS11730
• Genome accession: NZ_CP160400
• Coordinates: 2354467..2354916 (-)
• Length: 149 a.a.
• NCBI ID: WP_277290537.1
• Uniprot ID: -
• Organism: Streptococcus sp. ZY19097
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2349467..2359916

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABZ559_RS11690 (ABZ559_11690)	-	2349965..2350420 (-)	456	WP_277290533.1	CAAX protease	-
ABZ559_RS11695 (ABZ559_11695)	-	2350417..2350611 (-)	195	WP_273414269.1	hypothetical protein	-
ABZ559_RS11700 (ABZ559_11700)	-	2350623..2350820 (-)	198	WP_018376810.1	helix-turn-helix transcriptional regulator	-
ABZ559_RS11705 (ABZ559_11705)	-	2351210..2352403 (-)	1194	WP_367006522.1	acetate kinase	-
ABZ559_RS11710 (ABZ559_11710)	comYH	2352455..2353411 (-)	957	WP_018376808.1	class I SAM-dependent methyltransferase	Machinery gene
ABZ559_RS11715 (ABZ559_11715)	comYG	2353465..2353821 (-)	357	WP_367006523.1	competence type IV pilus minor pilin ComGG	Machinery gene
ABZ559_RS11720 (ABZ559_11720)	comYF	2353799..2354260 (-)	462	WP_367006524.1	competence type IV pilus minor pilin ComGF	Machinery gene
ABZ559_RS11725 (ABZ559_11725)	comGE	2354220..2354510 (-)	291	WP_367006526.1	competence type IV pilus minor pilin ComGE	-
ABZ559_RS11730 (ABZ559_11730)	comYD	2354467..2354916 (-)	450	WP_277290537.1	competence type IV pilus minor pilin ComGD	Machinery gene
ABZ559_RS11735 (ABZ559_11735)	comGC/cglC	2354870..2355202 (-)	333	WP_018376803.1	competence type IV pilus major pilin ComGC	Machinery gene
ABZ559_RS11740 (ABZ559_11740)	comYB	2355203..2356246 (-)	1044	WP_367006528.1	competence type IV pilus assembly protein ComGB	Machinery gene
ABZ559_RS11745 (ABZ559_11745)	comYA	2356170..2357111 (-)	942	WP_018376801.1	competence type IV pilus ATPase ComGA	Machinery gene
ABZ559_RS11750 (ABZ559_11750)	-	2357206..2357571 (-)	366	WP_273415187.1	DUF1033 family protein	-
ABZ559_RS11755 (ABZ559_11755)	-	2357705..2358556 (-)	852	WP_367006530.1	ABC transporter ATP-binding protein	-
ABZ559_RS11760 (ABZ559_11760)	-	2358559..2359239 (-)	681	WP_367006532.1	hypothetical protein	-
ABZ559_RS11765 (ABZ559_11765)	-	2359254..2359760 (-)	507	WP_367006534.1	hypothetical protein	-

Sequence

Protein

• Length: 149 a.a.
• Molecular weight: 16722.39 Da
• Isoelectric Point: 9.7954

>NTDB_id=1020958 ABZ559_RS11730 WP_277290537.1 2354467..2354916(-) (comYD) [Streptococcus sp. ZY19097]
MPILQKMLQVVKYQTKAFTLLESLLTLGVTCFLLLCLSGTVSRTFQKVEETLFFLSFENFYRDTQKLSITKQKSMSLDLS
SEKVSNGIGELHLPKTVDFSGQQTVKFDQAGGNSSLSKVTFKTSEKEVVYQLYLGSGNYKKISKSLHSP

Nucleotide

• Length: 450 bp

>NTDB_id=1020958 ABZ559_RS11730 WP_277290537.1 2354467..2354916(-) (comYD) [Streptococcus sp. ZY19097]
ATGCCAATCCTCCAAAAGATGCTCCAAGTCGTCAAGTATCAAACTAAGGCCTTCACCTTGTTGGAAAGTCTTTTAACCTT
AGGCGTGACCTGCTTTTTACTGCTTTGTCTTTCAGGAACGGTATCGAGAACTTTTCAGAAGGTAGAGGAAACCTTGTTTT
TCCTCTCGTTTGAAAATTTCTACCGCGATACCCAAAAATTAAGTATTACCAAACAGAAAAGTATGAGTTTAGACTTGTCT
TCTGAAAAAGTTTCTAATGGTATAGGAGAACTTCATTTGCCTAAGACTGTGGATTTCTCAGGACAACAGACTGTTAAATT
TGATCAAGCAGGGGGTAATTCCTCTTTGAGTAAAGTAACATTTAAAACATCTGAAAAAGAGGTGGTTTATCAATTGTATC
TAGGGAGTGGTAATTATAAAAAAATCAGTAAAAGCCTACATTCTCCTTGA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	59.69	86.577	0.517
comYD	Streptococcus mutans UA159	59.69	86.577	0.517
comGD/cglD	Streptococcus mitis NCTC 12261	49.275	92.617	0.456
comGD/cglD	Streptococcus pneumoniae Rx1	50.769	87.248	0.443
comGD/cglD	Streptococcus pneumoniae R6	50.769	87.248	0.443
comGD/cglD	Streptococcus pneumoniae TIGR4	50.769	87.248	0.443
comGD/cglD	Streptococcus pneumoniae D39	50.769	87.248	0.443
comGD/cglD	Streptococcus mitis SK321	49.231	87.248	0.43
comYD	Streptococcus gordonii str. Challis substr. CH1	50	84.564	0.423