Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB0R79_RS16145 Genome accession   NZ_CP160211
Coordinates   3227503..3228147 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain JM236     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3222503..3233147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R79_RS16110 (AB0R79_16110) - 3223688..3224119 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  AB0R79_RS16115 (AB0R79_16115) - 3224119..3224460 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  AB0R79_RS16120 (AB0R79_16120) - 3224453..3225934 (+) 1482 WP_007408671.1 Na+/H+ antiporter subunit D -
  AB0R79_RS16125 (AB0R79_16125) - 3225940..3226416 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  AB0R79_RS16130 (AB0R79_16130) - 3226416..3226700 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  AB0R79_RS16135 (AB0R79_16135) mnhG 3226684..3227058 (+) 375 WP_167340837.1 monovalent cation/H(+) antiporter subunit G -
  AB0R79_RS16140 (AB0R79_16140) - 3227098..3227481 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  AB0R79_RS16145 (AB0R79_16145) comA 3227503..3228147 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  AB0R79_RS16150 (AB0R79_16150) comP 3228228..3230525 (-) 2298 WP_366597590.1 sensor histidine kinase Regulator
  AB0R79_RS16155 (AB0R79_16155) comX 3230544..3230720 (-) 177 WP_015240484.1 competence pheromone ComX -
  AB0R79_RS16160 (AB0R79_16160) - 3230735..3231610 (-) 876 WP_025285191.1 polyprenyl synthetase family protein -
  AB0R79_RS16165 (AB0R79_16165) degQ 3231762..3231902 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  AB0R79_RS16170 (AB0R79_16170) - 3232367..3232708 (+) 342 WP_167340838.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=1019033 AB0R79_RS16145 WP_003152052.1 3227503..3228147(-) (comA) [Bacillus velezensis strain JM236]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1019033 AB0R79_RS16145 WP_003152052.1 3227503..3228147(-) (comA) [Bacillus velezensis strain JM236]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment