Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DQM73_RS00645 Genome accession   NZ_LS483346
Coordinates   114623..115213 (+) Length   196 a.a.
NCBI ID   WP_032908259.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC11085     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 109623..120213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM73_RS00620 (NCTC11085_00119) - 110364..110834 (-) 471 WP_002926374.1 DUF3021 family protein -
  DQM73_RS00625 (NCTC11085_00120) brsR 110831..111271 (-) 441 WP_002926373.1 LytTR family DNA-binding domain-containing protein Regulator
  DQM73_RS00630 (NCTC11085_00121) hexB 111460..113406 (+) 1947 WP_032908260.1 DNA mismatch repair endonuclease MutL Machinery gene
  DQM73_RS00635 (NCTC11085_00122) - 113442..113963 (-) 522 WP_002926371.1 RDD family protein -
  DQM73_RS00640 (NCTC11085_00123) - 113947..114453 (-) 507 WP_002908492.1 helix-turn-helix domain-containing protein -
  DQM73_RS00645 (NCTC11085_00124) ruvA 114623..115213 (+) 591 WP_032908259.1 Holliday junction branch migration protein RuvA Machinery gene
  DQM73_RS00650 (NCTC11085_00125) - 115224..115796 (+) 573 WP_002908494.1 DNA-3-methyladenine glycosylase I -
  DQM73_RS00655 (NCTC11085_00126) - 115806..116654 (-) 849 WP_002926370.1 helix-turn-helix domain-containing protein -
  DQM73_RS00665 (NCTC11085_00128) - 117253..117531 (+) 279 WP_223310420.1 bacteriocin immunity protein -
  DQM73_RS00675 (NCTC11085_00129) cinA 117941..119197 (+) 1257 WP_032908257.1 competence/damage-inducible protein A Machinery gene

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21607.04 Da        Isoelectric Point: 5.6978

>NTDB_id=1019032 DQM73_RS00645 WP_032908259.1 114623..115213(+) (ruvA) [Streptococcus sanguinis strain NCTC11085]
MYEYFKGIISKITAKYIVLEVNSIGYILHVANPYAYSGHLHQEAKVYVHQVVREDAELLYGFATEEEKQLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVAADGLAESKAPVQTVDNQELEEAMEAML
ALGYKAAELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1019032 DQM73_RS00645 WP_032908259.1 114623..115213(+) (ruvA) [Streptococcus sanguinis strain NCTC11085]
ATGTACGAATATTTTAAAGGAATCATCAGTAAAATTACAGCCAAATACATTGTATTGGAAGTCAACTCTATCGGCTATAT
TCTTCATGTGGCCAACCCCTATGCTTACTCAGGACATCTACATCAGGAAGCCAAGGTCTATGTTCACCAGGTGGTGAGAG
AAGACGCGGAGCTCCTATATGGCTTTGCGACTGAGGAGGAGAAGCAACTCTTTCTCAGCTTGATTTCAGTCTCAGGTATT
GGCCCAGTGTCTGCCCTGGCTATTATTGCGGCGGATGATAATGCTGGCTTAGTGCAAGCCATTGAGCAGAAAAACATCAC
CTACCTGACCAAGTTTCCTAAGATTGGTAAGAAAACAGCCCAGCAGATGGTGCTGGACTTAGAAGGCAAGGTAGTGGCGG
CGGATGGTCTGGCAGAAAGCAAGGCACCCGTCCAGACTGTGGATAATCAGGAGCTGGAAGAAGCTATGGAAGCCATGCTG
GCTCTGGGGTACAAGGCTGCTGAACTTAAGAAAATCAAGAAATTCTTTGAGGGAACGACGGATACAGCTGAAAACTATAT
CAAGTCTGCTCTTAAGATGTTGGTGAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

85.279

100

0.857
  ruvA Streptococcus pneumoniae D39

85.279

100

0.857
  ruvA Streptococcus pneumoniae TIGR4

84.772

100

0.852
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.346

100

0.439