Detailed information
Bioinformatically predicted
Overview
| Name | comGC/cglC | Type | Machinery gene |
| Locus tag | ABG809_RS03540 | Genome accession | NZ_CP159893 |
| Coordinates | 718197..718523 (+) | Length | 108 a.a. |
| NCBI ID | WP_003098806.1 | Uniprot ID | - |
| Organism | Streptococcus iniae strain QMA0177 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 713197..723523
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABG809_RS03525 (ABG809_03525) | - | 715863..716228 (+) | 366 | WP_003098799.1 | DUF1033 family protein | - |
| ABG809_RS03530 (ABG809_03530) | comYA | 716288..717229 (+) | 942 | WP_003098801.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ABG809_RS03535 (ABG809_03535) | comYB | 717180..718196 (+) | 1017 | WP_003098804.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ABG809_RS03540 (ABG809_03540) | comGC/cglC | 718197..718523 (+) | 327 | WP_003098806.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ABG809_RS03545 (ABG809_03545) | comGD | 718483..718911 (+) | 429 | WP_003098807.1 | competence type IV pilus minor pilin ComGD | - |
| ABG809_RS03550 (ABG809_03550) | comGE | 718883..719176 (+) | 294 | WP_031239176.1 | competence type IV pilus minor pilin ComGE | - |
| ABG809_RS03555 (ABG809_03555) | comYF | 719136..719585 (+) | 450 | WP_119773875.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| ABG809_RS03560 (ABG809_03560) | comGG | 719575..719928 (+) | 354 | WP_003098812.1 | competence type IV pilus minor pilin ComGG | - |
| ABG809_RS03565 (ABG809_03565) | comYH | 719990..720946 (+) | 957 | WP_003098815.1 | class I SAM-dependent methyltransferase | Machinery gene |
| ABG809_RS03570 (ABG809_03570) | - | 721003..722198 (+) | 1196 | Protein_650 | acetate kinase | - |
| ABG809_RS03575 (ABG809_03575) | - | 722320..722523 (+) | 204 | WP_003098819.1 | helix-turn-helix transcriptional regulator | - |
| ABG809_RS03580 (ABG809_03580) | - | 722536..722988 (+) | 453 | WP_121796494.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 108 a.a. Molecular weight: 12153.19 Da Isoelectric Point: 10.0312
>NTDB_id=1016652 ABG809_RS03540 WP_003098806.1 718197..718523(+) (comGC/cglC) [Streptococcus iniae strain QMA0177]
MKTKCKQLKESRTKAFTLLEMLIVLLIISVLMLLFIPNLSKQKDKVTDAGNAAVVKIVENQAELYELTEGGKASLAQLQS
KGHITDKQAKAYQDYYAKNSDKHRQVNN
MKTKCKQLKESRTKAFTLLEMLIVLLIISVLMLLFIPNLSKQKDKVTDAGNAAVVKIVENQAELYELTEGGKASLAQLQS
KGHITDKQAKAYQDYYAKNSDKHRQVNN
Nucleotide
Download Length: 327 bp
>NTDB_id=1016652 ABG809_RS03540 WP_003098806.1 718197..718523(+) (comGC/cglC) [Streptococcus iniae strain QMA0177]
ATGAAAACAAAATGTAAACAACTAAAAGAAAGCCGTACTAAAGCTTTCACACTTCTAGAAATGTTGATTGTTTTGCTAAT
TATTAGTGTTCTTATGCTACTGTTTATTCCGAATTTAAGTAAGCAAAAAGATAAGGTTACAGATGCTGGTAATGCTGCAG
TGGTTAAAATTGTTGAAAATCAGGCGGAACTATATGAATTAACGGAAGGTGGGAAAGCAAGCCTCGCTCAACTCCAATCA
AAAGGTCATATTACAGACAAACAAGCGAAGGCTTATCAGGATTATTATGCCAAAAACAGTGACAAGCATAGACAAGTTAA
CAACTAG
ATGAAAACAAAATGTAAACAACTAAAAGAAAGCCGTACTAAAGCTTTCACACTTCTAGAAATGTTGATTGTTTTGCTAAT
TATTAGTGTTCTTATGCTACTGTTTATTCCGAATTTAAGTAAGCAAAAAGATAAGGTTACAGATGCTGGTAATGCTGCAG
TGGTTAAAATTGTTGAAAATCAGGCGGAACTATATGAATTAACGGAAGGTGGGAAAGCAAGCCTCGCTCAACTCCAATCA
AAAGGTCATATTACAGACAAACAAGCGAAGGCTTATCAGGATTATTATGCCAAAAACAGTGACAAGCATAGACAAGTTAA
CAACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
59.259 |
100 |
0.593 |
| comGC/cglC | Streptococcus pneumoniae D39 |
59.259 |
100 |
0.593 |
| comGC/cglC | Streptococcus pneumoniae R6 |
59.259 |
100 |
0.593 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
59.259 |
100 |
0.593 |
| comGC/cglC | Streptococcus mitis SK321 |
63.366 |
93.519 |
0.593 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
61.165 |
95.37 |
0.583 |
| comYC | Streptococcus mutans UA140 |
59.223 |
95.37 |
0.565 |
| comYC | Streptococcus mutans UA159 |
59.223 |
95.37 |
0.565 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
64.835 |
84.259 |
0.546 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
51.376 |
100 |
0.519 |
| comYC | Streptococcus suis isolate S10 |
60.92 |
80.556 |
0.491 |