Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   ABG809_RS03530 Genome accession   NZ_CP159893
Coordinates   716288..717229 (+) Length   313 a.a.
NCBI ID   WP_003098801.1    Uniprot ID   -
Organism   Streptococcus iniae strain QMA0177     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 711288..722229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABG809_RS03520 (ABG809_03520) rpoC 712112..715744 (+) 3633 WP_003098797.1 DNA-directed RNA polymerase subunit beta' -
  ABG809_RS03525 (ABG809_03525) - 715863..716228 (+) 366 WP_003098799.1 DUF1033 family protein -
  ABG809_RS03530 (ABG809_03530) comYA 716288..717229 (+) 942 WP_003098801.1 competence type IV pilus ATPase ComGA Machinery gene
  ABG809_RS03535 (ABG809_03535) comYB 717180..718196 (+) 1017 WP_003098804.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABG809_RS03540 (ABG809_03540) comGC/cglC 718197..718523 (+) 327 WP_003098806.1 competence type IV pilus major pilin ComGC Machinery gene
  ABG809_RS03545 (ABG809_03545) comGD 718483..718911 (+) 429 WP_003098807.1 competence type IV pilus minor pilin ComGD -
  ABG809_RS03550 (ABG809_03550) comGE 718883..719176 (+) 294 WP_031239176.1 competence type IV pilus minor pilin ComGE -
  ABG809_RS03555 (ABG809_03555) comYF 719136..719585 (+) 450 WP_119773875.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABG809_RS03560 (ABG809_03560) comGG 719575..719928 (+) 354 WP_003098812.1 competence type IV pilus minor pilin ComGG -
  ABG809_RS03565 (ABG809_03565) comYH 719990..720946 (+) 957 WP_003098815.1 class I SAM-dependent methyltransferase Machinery gene
  ABG809_RS03570 (ABG809_03570) - 721003..722198 (+) 1196 Protein_650 acetate kinase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35927.07 Da        Isoelectric Point: 7.4276

>NTDB_id=1016650 ABG809_RS03530 WP_003098801.1 716288..717229(+) (comYA) [Streptococcus iniae strain QMA0177]
MIQSLGKEVIKMADDLKAQDIYIIPEGDDYKIHMRIDGERRRIESFDGAQMPQLISHFKYLSGMNVGEKRRCQLGACDYQ
YGAKNDISLRLSTVGDYRGKESLVIRLLHHQNRSLSFWFDREKELAEQVTRRGLYLFSGPVGSGKTSLMYQLLAKDSKQK
QIITIEDPVEIKDTRMLQLQVNDSIGTTYDNLIKLSLRHRPDVLIIGEIRDTETARAAIRASLTGSVVFSTIHAKSIKGV
YERLIELGISREEVTQTLQLVVYQRLLGGRGLIDFTRKGFENYQQEQWNKDLDQLFADGYLTEQEIQTEKIIS

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1016650 ABG809_RS03530 WP_003098801.1 716288..717229(+) (comYA) [Streptococcus iniae strain QMA0177]
ATGATTCAAAGCTTAGGAAAAGAAGTGATTAAAATGGCAGATGACTTGAAGGCTCAGGACATATATATTATTCCAGAGGG
CGATGATTACAAGATTCATATGCGTATTGATGGAGAAAGAAGACGCATTGAATCTTTTGATGGCGCACAGATGCCTCAAC
TCATCAGTCACTTTAAATATCTATCGGGAATGAATGTTGGCGAAAAACGTCGATGCCAACTTGGCGCCTGTGATTACCAA
TATGGTGCTAAAAATGACATATCGCTTCGACTATCAACAGTTGGAGATTATCGTGGGAAGGAAAGTTTAGTAATCAGGCT
TTTACACCACCAAAACAGGTCCTTATCTTTTTGGTTTGATAGGGAAAAGGAATTGGCCGAGCAAGTCACCAGACGAGGAC
TTTATTTATTTTCAGGCCCCGTTGGTTCCGGTAAAACGAGTTTAATGTATCAACTTCTAGCAAAGGATTCTAAACAAAAG
CAAATCATCACTATTGAAGATCCCGTTGAGATTAAGGACACAAGAATGCTACAGTTGCAAGTAAATGACAGTATTGGAAC
GACATATGATAATTTAATTAAATTATCTTTGCGTCATCGTCCAGATGTTCTCATTATTGGTGAAATTAGAGACACTGAGA
CAGCTAGAGCAGCCATTAGAGCAAGTTTAACTGGTAGTGTCGTCTTTTCCACCATACATGCTAAAAGCATCAAGGGTGTC
TATGAGAGATTAATTGAATTAGGAATCTCTAGAGAAGAAGTGACACAAACACTTCAACTTGTTGTTTATCAACGGCTACT
TGGTGGTCGAGGCTTAATTGACTTTACACGAAAGGGGTTTGAAAACTATCAACAAGAGCAGTGGAATAAAGACTTGGATC
AACTTTTTGCGGATGGATATCTCACTGAGCAAGAAATCCAAACAGAGAAAATTATCAGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(14-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA140

62.058

99.361

0.617
  comYA Streptococcus mutans UA159

62.058

99.361

0.617
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.29

99.042

0.607
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

59.807

99.361

0.594
  comGA/cglA/cilD Streptococcus pneumoniae D39

59.486

99.361

0.591
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

59.486

99.361

0.591
  comGA/cglA/cilD Streptococcus pneumoniae R6

59.486

99.361

0.591
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

59.486

99.361

0.591
  comYA Streptococcus gordonii str. Challis substr. CH1

58.842

99.361

0.585
  comGA Lactococcus lactis subsp. cremoris KW2

53.376

99.361

0.53

Multiple sequence alignment