Detailed information NTG1016653

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: ABG809_RS03555
• Genome accession: NZ_CP159893
• Coordinates: 719136..719585 (+)
• Length: 149 a.a.
• NCBI ID: WP_119773875.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain QMA0177
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 714136..724585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABG809_RS03525 (ABG809_03525)	-	715863..716228 (+)	366	WP_003098799.1	DUF1033 family protein	-
ABG809_RS03530 (ABG809_03530)	comYA	716288..717229 (+)	942	WP_003098801.1	competence type IV pilus ATPase ComGA	Machinery gene
ABG809_RS03535 (ABG809_03535)	comYB	717180..718196 (+)	1017	WP_003098804.1	competence type IV pilus assembly protein ComGB	Machinery gene
ABG809_RS03540 (ABG809_03540)	comGC/cglC	718197..718523 (+)	327	WP_003098806.1	competence type IV pilus major pilin ComGC	Machinery gene
ABG809_RS03545 (ABG809_03545)	comGD	718483..718911 (+)	429	WP_003098807.1	competence type IV pilus minor pilin ComGD	-
ABG809_RS03550 (ABG809_03550)	comGE	718883..719176 (+)	294	WP_031239176.1	competence type IV pilus minor pilin ComGE	-
ABG809_RS03555 (ABG809_03555)	comYF	719136..719585 (+)	450	WP_119773875.1	competence type IV pilus minor pilin ComGF	Machinery gene
ABG809_RS03560 (ABG809_03560)	comGG	719575..719928 (+)	354	WP_003098812.1	competence type IV pilus minor pilin ComGG	-
ABG809_RS03565 (ABG809_03565)	comYH	719990..720946 (+)	957	WP_003098815.1	class I SAM-dependent methyltransferase	Machinery gene
ABG809_RS03570 (ABG809_03570)	-	721003..722198 (+)	1196	Protein_650	acetate kinase	-
ABG809_RS03575 (ABG809_03575)	-	722320..722523 (+)	204	WP_003098819.1	helix-turn-helix transcriptional regulator	-
ABG809_RS03580 (ABG809_03580)	-	722536..722988 (+)	453	WP_121796494.1	hypothetical protein	-
ABG809_RS03585 (ABG809_03585)	-	722998..723653 (+)	656	Protein_653	lysostaphin resistance A-like protein	-
ABG809_RS03590 (ABG809_03590)	proC	723686..724456 (-)	771	WP_003098824.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 149 a.a.
• Molecular weight: 16976.98 Da
• Isoelectric Point: 10.2834

>NTDB_id=1016653 ABG809_RS03555 WP_119773875.1 719136..719585(+) (comYF) [Streptococcus iniae strain QMA0177]
MKSIKKSLALRKISLKAFTLLECMLALVILSGAILVYQGMTKSLFFNMSYLVENDQDKWLLFSQQLRAELTGARFEKVEN
NKLYVAKEGKQIAFGLSKQGDFRKTAANGHGYHPMLLDLKDAKISHHNKEITVSITWKSGLERVFLYAF

Nucleotide

• Length: 450 bp

>NTDB_id=1016653 ABG809_RS03555 WP_119773875.1 719136..719585(+) (comYF) [Streptococcus iniae strain QMA0177]
GTGAAAAGCATCAAAAAGTCTTTAGCCTTAAGAAAAATTAGCCTCAAGGCATTTACGCTTTTAGAGTGTATGTTGGCCTT
AGTGATATTGTCAGGTGCCATCTTAGTTTATCAAGGAATGACAAAATCTTTATTTTTTAACATGTCTTATTTGGTTGAAA
ATGATCAGGACAAGTGGTTGTTGTTTTCACAACAGTTGAGAGCTGAGTTAACAGGAGCTCGGTTTGAGAAGGTCGAAAAT
AATAAACTTTACGTAGCAAAAGAAGGAAAGCAGATAGCTTTTGGACTTTCAAAACAAGGAGATTTTCGAAAAACAGCAGC
AAATGGTCATGGTTATCATCCCATGCTTCTGGATCTTAAAGATGCTAAGATTAGTCATCATAATAAGGAGATTACAGTAA
GTATCACTTGGAAAAGTGGGCTAGAAAGAGTCTTTCTTTATGCTTTTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (53-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	52.174	92.617	0.483
comYF	Streptococcus mutans UA159	51.449	92.617	0.477
comGF/cglF	Streptococcus pneumoniae D39	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae Rx1	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae R6	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae TIGR4	46.617	89.262	0.416
comGF/cglF	Streptococcus mitis NCTC 12261	45.865	89.262	0.409
comGF	Lactococcus lactis subsp. cremoris KW2	43.478	92.617	0.403
comGF/cglF	Streptococcus mitis SK321	44.361	89.262	0.396