Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | ABG809_RS03565 | Genome accession | NZ_CP159893 |
| Coordinates | 719990..720946 (+) | Length | 318 a.a. |
| NCBI ID | WP_003098815.1 | Uniprot ID | - |
| Organism | Streptococcus iniae strain QMA0177 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 714990..725946
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABG809_RS03525 (ABG809_03525) | - | 715863..716228 (+) | 366 | WP_003098799.1 | DUF1033 family protein | - |
| ABG809_RS03530 (ABG809_03530) | comYA | 716288..717229 (+) | 942 | WP_003098801.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ABG809_RS03535 (ABG809_03535) | comYB | 717180..718196 (+) | 1017 | WP_003098804.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ABG809_RS03540 (ABG809_03540) | comGC/cglC | 718197..718523 (+) | 327 | WP_003098806.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ABG809_RS03545 (ABG809_03545) | comGD | 718483..718911 (+) | 429 | WP_003098807.1 | competence type IV pilus minor pilin ComGD | - |
| ABG809_RS03550 (ABG809_03550) | comGE | 718883..719176 (+) | 294 | WP_031239176.1 | competence type IV pilus minor pilin ComGE | - |
| ABG809_RS03555 (ABG809_03555) | comYF | 719136..719585 (+) | 450 | WP_119773875.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| ABG809_RS03560 (ABG809_03560) | comGG | 719575..719928 (+) | 354 | WP_003098812.1 | competence type IV pilus minor pilin ComGG | - |
| ABG809_RS03565 (ABG809_03565) | comYH | 719990..720946 (+) | 957 | WP_003098815.1 | class I SAM-dependent methyltransferase | Machinery gene |
| ABG809_RS03570 (ABG809_03570) | - | 721003..722198 (+) | 1196 | Protein_650 | acetate kinase | - |
| ABG809_RS03575 (ABG809_03575) | - | 722320..722523 (+) | 204 | WP_003098819.1 | helix-turn-helix transcriptional regulator | - |
| ABG809_RS03580 (ABG809_03580) | - | 722536..722988 (+) | 453 | WP_121796494.1 | hypothetical protein | - |
| ABG809_RS03585 (ABG809_03585) | - | 722998..723653 (+) | 656 | Protein_653 | lysostaphin resistance A-like protein | - |
| ABG809_RS03590 (ABG809_03590) | proC | 723686..724456 (-) | 771 | WP_003098824.1 | pyrroline-5-carboxylate reductase | - |
| ABG809_RS03595 (ABG809_03595) | pepA | 724480..725547 (-) | 1068 | WP_003098826.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 35968.86 Da Isoelectric Point: 4.5568
>NTDB_id=1016654 ABG809_RS03565 WP_003098815.1 719990..720946(+) (comYH) [Streptococcus iniae strain QMA0177]
MNFENIEKAFELILENSQLIENELKTHIYDALIEQNSFYLGAEGASEQVAKNNEVLRSLNLSKEEWRRAFQFIFIKVGQT
EKLQANHQFTPDSLGFLILFLIETLTQEDSLDILEIGSGTGNLAQTLLNNSGKQLDYLGIEVDDLLIDLSASIAEIMNST
ARFVQEDAVRPQILKESHIIISDLPVGYYPNDEIASRYQVASPDGHTYAHHLLMEQALKYLKQDGFAIFLAPASLLQSQQ
SHLLKEWLKGYAQLSAVITLPETFFGDPSVAKSLIVLQKQSDKKGETFVYPLTDLQSADKVRLFMENFKKWKADNVFS
MNFENIEKAFELILENSQLIENELKTHIYDALIEQNSFYLGAEGASEQVAKNNEVLRSLNLSKEEWRRAFQFIFIKVGQT
EKLQANHQFTPDSLGFLILFLIETLTQEDSLDILEIGSGTGNLAQTLLNNSGKQLDYLGIEVDDLLIDLSASIAEIMNST
ARFVQEDAVRPQILKESHIIISDLPVGYYPNDEIASRYQVASPDGHTYAHHLLMEQALKYLKQDGFAIFLAPASLLQSQQ
SHLLKEWLKGYAQLSAVITLPETFFGDPSVAKSLIVLQKQSDKKGETFVYPLTDLQSADKVRLFMENFKKWKADNVFS
Nucleotide
Download Length: 957 bp
>NTDB_id=1016654 ABG809_RS03565 WP_003098815.1 719990..720946(+) (comYH) [Streptococcus iniae strain QMA0177]
ATGAATTTTGAAAATATTGAGAAAGCTTTTGAGCTTATTTTAGAAAATAGTCAACTTATTGAAAATGAGTTGAAAACGCA
CATTTATGATGCCCTTATTGAGCAGAATTCTTTTTATTTGGGAGCTGAAGGTGCTAGTGAGCAGGTCGCTAAAAACAATG
AAGTTTTAAGGTCACTCAATTTAAGTAAAGAAGAGTGGCGTCGCGCTTTTCAGTTTATTTTTATCAAGGTTGGTCAAACA
GAAAAACTGCAGGCGAATCACCAATTTACACCAGATAGTCTAGGTTTCCTTATTTTATTTTTAATTGAAACCTTGACACA
AGAAGACTCTCTTGACATTTTAGAGATTGGCAGTGGGACAGGTAATCTAGCACAAACACTTTTGAATAATAGTGGTAAAC
AATTAGATTACTTAGGTATTGAAGTGGACGATTTACTCATTGATTTATCAGCTAGTATAGCTGAGATAATGAATTCGACA
GCACGTTTTGTTCAAGAAGATGCCGTTAGACCACAAATTTTGAAAGAAAGTCATATTATTATCAGTGATTTACCAGTAGG
TTATTATCCTAATGATGAGATTGCTAGTCGTTATCAGGTTGCAAGTCCAGATGGTCATACCTATGCCCATCACTTATTGA
TGGAACAGGCTTTGAAATATTTAAAACAAGATGGCTTTGCAATTTTCTTAGCACCAGCCAGTCTTTTGCAAAGTCAACAA
AGCCATCTCCTTAAAGAGTGGTTAAAAGGTTATGCTCAGTTATCTGCAGTGATTACCTTGCCAGAAACATTCTTTGGAGA
TCCATCCGTGGCTAAATCACTGATTGTTCTGCAAAAGCAGAGTGACAAAAAAGGAGAAACCTTTGTTTATCCATTGACTG
ATTTACAGTCTGCAGATAAGGTTCGTCTCTTCATGGAGAACTTCAAAAAATGGAAAGCTGATAATGTCTTTTCATGA
ATGAATTTTGAAAATATTGAGAAAGCTTTTGAGCTTATTTTAGAAAATAGTCAACTTATTGAAAATGAGTTGAAAACGCA
CATTTATGATGCCCTTATTGAGCAGAATTCTTTTTATTTGGGAGCTGAAGGTGCTAGTGAGCAGGTCGCTAAAAACAATG
AAGTTTTAAGGTCACTCAATTTAAGTAAAGAAGAGTGGCGTCGCGCTTTTCAGTTTATTTTTATCAAGGTTGGTCAAACA
GAAAAACTGCAGGCGAATCACCAATTTACACCAGATAGTCTAGGTTTCCTTATTTTATTTTTAATTGAAACCTTGACACA
AGAAGACTCTCTTGACATTTTAGAGATTGGCAGTGGGACAGGTAATCTAGCACAAACACTTTTGAATAATAGTGGTAAAC
AATTAGATTACTTAGGTATTGAAGTGGACGATTTACTCATTGATTTATCAGCTAGTATAGCTGAGATAATGAATTCGACA
GCACGTTTTGTTCAAGAAGATGCCGTTAGACCACAAATTTTGAAAGAAAGTCATATTATTATCAGTGATTTACCAGTAGG
TTATTATCCTAATGATGAGATTGCTAGTCGTTATCAGGTTGCAAGTCCAGATGGTCATACCTATGCCCATCACTTATTGA
TGGAACAGGCTTTGAAATATTTAAAACAAGATGGCTTTGCAATTTTCTTAGCACCAGCCAGTCTTTTGCAAAGTCAACAA
AGCCATCTCCTTAAAGAGTGGTTAAAAGGTTATGCTCAGTTATCTGCAGTGATTACCTTGCCAGAAACATTCTTTGGAGA
TCCATCCGTGGCTAAATCACTGATTGTTCTGCAAAAGCAGAGTGACAAAAAAGGAGAAACCTTTGTTTATCCATTGACTG
ATTTACAGTCTGCAGATAAGGTTCGTCTCTTCATGGAGAACTTCAAAAAATGGAAAGCTGATAATGTCTTTTCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
67.192 |
99.686 |
0.67 |
| comYH | Streptococcus mutans UA140 |
66.877 |
99.686 |
0.667 |