Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABS648_RS06290 Genome accession   NZ_CP158373
Coordinates   1305272..1306492 (-) Length   406 a.a.
NCBI ID   WP_350447880.1    Uniprot ID   -
Organism   Pseudomonas solani strain T3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1300272..1311492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABS648_RS06245 (ABS648_06230) - 1300695..1300868 (-) 174 WP_021221826.1 DUF3094 family protein -
  ABS648_RS06250 (ABS648_06235) - 1300955..1301581 (-) 627 WP_021221827.1 DUF1780 domain-containing protein -
  ABS648_RS06255 (ABS648_06240) - 1301695..1302120 (+) 426 WP_350447874.1 GNAT family N-acetyltransferase -
  ABS648_RS06260 (ABS648_06245) - 1302117..1302584 (+) 468 WP_350447875.1 FAD/FMN-containing dehydrogenase -
  ABS648_RS06265 (ABS648_06250) - 1302581..1303267 (+) 687 WP_350447876.1 energy-coupling factor ABC transporter permease -
  ABS648_RS06270 (ABS648_06255) - 1303375..1303590 (+) 216 WP_350447877.1 hypothetical protein -
  ABS648_RS06275 (ABS648_06260) yacG 1303594..1303794 (-) 201 WP_021221832.1 DNA gyrase inhibitor YacG -
  ABS648_RS06280 (ABS648_06265) coaE 1303791..1304402 (-) 612 WP_350447878.1 dephospho-CoA kinase -
  ABS648_RS06285 (ABS648_06270) pilD 1304402..1305271 (-) 870 WP_350447879.1 A24 family peptidase Machinery gene
  ABS648_RS06290 (ABS648_06275) pilC 1305272..1306492 (-) 1221 WP_350447880.1 type II secretion system F family protein Machinery gene
  ABS648_RS06295 (ABS648_06280) pilB 1306496..1308199 (-) 1704 WP_350447881.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABS648_RS06300 (ABS648_06285) pilA 1308316..1308762 (-) 447 WP_184488627.1 pilin Machinery gene
  ABS648_RS06305 (ABS648_06290) - 1308918..1310645 (+) 1728 WP_350447882.1 Wzy polymerase domain-containing protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44174.92 Da        Isoelectric Point: 9.9370

>NTDB_id=1011052 ABS648_RS06290 WP_350447880.1 1305272..1306492(-) (pilC) [Pseudomonas solani strain T3]
MAEKAQKSSVFKWEGTDKKGTKVTGEISGINPALVKAQLRKQGINPLKVRKKAASLFSAGKKIKPLDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPNMRKLVDEVKQEVAAGNSFANSLRKKPMYFDELYCNLVDSGEQSGALETLLDRVATYKEKT
EQLKAKIKKAMTYPIAVLVVAVIVSAILLIKVVPQFKDVFKGFGAELPAFTQMVVNLSEALQTWWFVILIATFGTIFGIG
QFYKRSQKFRDAVDRGVLKMPIVGDIVYKSSVARYARTLSTTFAAGVPLVDALDSVSGATGNVVFKNAVGKIKQDVSTGM
QLNFSMRTTGVFPSMAIQMTAIGEESGALDAMLDKVASFYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1011052 ABS648_RS06290 WP_350447880.1 1305272..1306492(-) (pilC) [Pseudomonas solani strain T3]
ATGGCGGAAAAAGCACAAAAATCGAGTGTCTTCAAATGGGAAGGCACCGACAAGAAGGGTACCAAGGTCACTGGTGAAAT
CAGCGGCATAAATCCGGCGCTGGTTAAAGCACAGCTCCGCAAGCAGGGTATCAACCCACTCAAGGTACGCAAAAAGGCGG
CATCCCTTTTCAGCGCTGGCAAGAAGATCAAGCCGTTGGATATCGCCCTGTTCACCCGGCAAATGGCCACCATGATGAAG
GCCGGCGTTCCGCTGCTGCAAAGCTTCGACATCATCGGTGAAGGCTTCGAAAACCCCAACATGCGCAAGCTGGTGGACGA
GGTGAAGCAAGAGGTGGCGGCGGGTAACAGCTTCGCCAACTCCCTACGCAAGAAGCCGATGTATTTCGATGAGCTGTATT
GCAACCTGGTCGATTCCGGTGAGCAGTCTGGTGCGCTGGAAACACTTCTGGATCGAGTCGCGACTTATAAAGAGAAGACC
GAACAGCTAAAAGCCAAGATCAAGAAGGCCATGACCTACCCGATCGCGGTCTTGGTCGTTGCGGTCATCGTTTCAGCCAT
CTTGCTGATCAAGGTCGTGCCACAGTTCAAGGACGTTTTCAAAGGCTTTGGCGCAGAACTGCCGGCCTTTACCCAAATGG
TGGTGAACCTCTCTGAAGCCCTTCAGACTTGGTGGTTTGTCATACTGATAGCCACCTTCGGCACTATATTTGGCATCGGT
CAGTTCTATAAGCGCTCGCAAAAATTCCGCGACGCTGTAGATAGGGGCGTTCTAAAAATGCCGATTGTCGGCGACATCGT
CTACAAGTCATCAGTCGCACGCTATGCCCGTACGCTCTCTACCACATTCGCAGCAGGCGTTCCGCTGGTAGACGCGCTGG
ACTCCGTATCCGGCGCCACAGGTAACGTGGTATTCAAGAATGCAGTTGGGAAAATCAAGCAAGACGTATCCACCGGTATG
CAATTGAACTTCTCCATGCGCACTACCGGTGTATTCCCATCAATGGCCATCCAGATGACGGCCATCGGCGAAGAGTCCGG
TGCGCTCGACGCAATGCTTGACAAAGTTGCCTCCTTCTATGAAGAAGAAGTGGACAACGCCGTAGACAACCTGACCACCC
TGATGGAGCCCATGATCATGGCCGTCCTCGGCGTACTGGTCGGCGGCCTGATCATCGCGATGTACCTGCCTATCTTCCAG
CTCGGTTCGGTAGTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

80.741

99.754

0.805
  pilC Acinetobacter baylyi ADP1

62.315

100

0.623
  pilC Acinetobacter baumannii D1279779

61.481

99.754

0.613
  pilC Legionella pneumophila strain ERS1305867

54.04

97.537

0.527
  pilG Neisseria gonorrhoeae MS11

45.025

99.015

0.446
  pilG Neisseria meningitidis 44/76-A

44.665

99.261

0.443
  pilC Vibrio cholerae strain A1552

43.073

97.783

0.421
  pilC Vibrio campbellii strain DS40M4

41.562

97.783

0.406
  pilC Thermus thermophilus HB27

37.5

98.522

0.369

Multiple sequence alignment