Detailed information NTG1011051

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABS648_RS06285
• Genome accession: NZ_CP158373
• Coordinates: 1304402..1305271 (-)
• Length: 289 a.a.
• NCBI ID: WP_350447879.1
• Uniprot ID: A0AAU7Y618
• Organism: Pseudomonas solani strain T3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1299402..1310271

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABS648_RS06245 (ABS648_06230)	-	1300695..1300868 (-)	174	WP_021221826.1	DUF3094 family protein	-
ABS648_RS06250 (ABS648_06235)	-	1300955..1301581 (-)	627	WP_021221827.1	DUF1780 domain-containing protein	-
ABS648_RS06255 (ABS648_06240)	-	1301695..1302120 (+)	426	WP_350447874.1	GNAT family N-acetyltransferase	-
ABS648_RS06260 (ABS648_06245)	-	1302117..1302584 (+)	468	WP_350447875.1	FAD/FMN-containing dehydrogenase	-
ABS648_RS06265 (ABS648_06250)	-	1302581..1303267 (+)	687	WP_350447876.1	energy-coupling factor ABC transporter permease	-
ABS648_RS06270 (ABS648_06255)	-	1303375..1303590 (+)	216	WP_350447877.1	hypothetical protein	-
ABS648_RS06275 (ABS648_06260)	yacG	1303594..1303794 (-)	201	WP_021221832.1	DNA gyrase inhibitor YacG	-
ABS648_RS06280 (ABS648_06265)	coaE	1303791..1304402 (-)	612	WP_350447878.1	dephospho-CoA kinase	-
ABS648_RS06285 (ABS648_06270)	pilD	1304402..1305271 (-)	870	WP_350447879.1	A24 family peptidase	Machinery gene
ABS648_RS06290 (ABS648_06275)	pilC	1305272..1306492 (-)	1221	WP_350447880.1	type II secretion system F family protein	Machinery gene
ABS648_RS06295 (ABS648_06280)	pilB	1306496..1308199 (-)	1704	WP_350447881.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABS648_RS06300 (ABS648_06285)	pilA	1308316..1308762 (-)	447	WP_184488627.1	pilin	Machinery gene

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31762.69 Da
• Isoelectric Point: 6.6206

>NTDB_id=1011051 ABS648_RS06285 WP_350447879.1 1304402..1305271(-) (pilD) [Pseudomonas solani strain T3]
MTVIDFLAGNLPAFVFCIFLLGLLVGSFLNVVIYRLPVMMFRDWKAQAREALELPAEPKGDTFNLILPNSRCPHCSHEIQ
AWENIPVVSWLALGGKCSSCKAPIKKRYPLVELTCGLLSAYVAWHFGFTWQAGAFLVLTWGLLAMSMIDVDHQLLPDSLV
LPLLWLGLILNNQGMFATPSDALWGAVAGYLSLWSVYWVFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGIIILKLRDADSGTPIPFGPYLAIAGWIALLWGDQITGTYLHFAGF

Nucleotide

• Length: 870 bp

>NTDB_id=1011051 ABS648_RS06285 WP_350447879.1 1304402..1305271(-) (pilD) [Pseudomonas solani strain T3]
GTGACAGTCATCGACTTCCTGGCCGGCAATTTGCCGGCCTTTGTTTTCTGCATCTTCCTCCTCGGCCTTCTCGTCGGCAG
CTTCCTCAACGTCGTCATCTACCGCTTGCCGGTGATGATGTTCCGTGACTGGAAGGCGCAGGCGCGGGAGGCGTTGGAGC
TGCCGGCTGAGCCCAAGGGCGATACCTTCAACCTGATCCTGCCGAACTCGCGCTGCCCTCATTGCAGCCACGAGATCCAG
GCGTGGGAGAACATCCCCGTGGTCAGCTGGCTGGCCTTGGGTGGCAAATGCTCGTCGTGCAAGGCGCCGATCAAGAAGCG
CTACCCGCTGGTGGAGCTGACCTGTGGCCTGCTGTCGGCCTATGTGGCCTGGCATTTCGGCTTTACCTGGCAGGCCGGGG
CGTTCCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGCATGATCGACGTCGACCACCAGTTGCTGCCGGATTCCCTGGTA
CTGCCGCTGCTGTGGCTCGGCCTGATCCTCAACAACCAGGGCATGTTCGCCACGCCCAGCGATGCGCTCTGGGGCGCGGT
GGCGGGCTATCTCAGCCTGTGGTCGGTGTATTGGGTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGTTGCTGGCGATGCTCGGTGCCTGGGGCGGCTGGCAGGTGTTGCCGCTGACCATCCTGCTGTCGTCCCTGGTGGGC
GCGGTGCTGGGGATCATCATCCTCAAGCTGCGCGATGCCGACAGCGGCACCCCCATTCCTTTCGGACCCTACCTGGCGAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGATCAAATAACCGGGACCTATCTCCACTTCGCCGGTTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	52.465	98.27	0.516
pilD	Vibrio cholerae strain A1552	56.015	92.042	0.516
pilD	Acinetobacter nosocomialis M2	52.113	98.27	0.512
pilD	Vibrio campbellii strain DS40M4	52.747	94.464	0.498
pilD	Neisseria gonorrhoeae MS11	51.724	90.311	0.467