Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABRA92_RS02895 | Genome accession | NZ_CP158305 |
| Coordinates | 585298..585717 (-) | Length | 139 a.a. |
| NCBI ID | WP_140275345.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain VP93 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 580298..590717
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABRA92_RS02875 | coaE | 580811..581425 (-) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
| ABRA92_RS02880 | pilD | 581426..582295 (-) | 870 | WP_031830116.1 | A24 family peptidase | Machinery gene |
| ABRA92_RS02885 | pilC | 582360..583583 (-) | 1224 | WP_218763322.1 | type II secretion system F family protein | Machinery gene |
| ABRA92_RS02890 | pilB | 583607..585292 (-) | 1686 | WP_350225701.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABRA92_RS02895 | pilA | 585298..585717 (-) | 420 | WP_140275345.1 | pilin | Machinery gene |
| ABRA92_RS02900 | nadC | 585981..586868 (-) | 888 | WP_025442237.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ABRA92_RS02905 | ampD | 586961..587512 (+) | 552 | WP_005462574.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ABRA92_RS02910 | pdhR | 587918..588685 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14212.21 Da Isoelectric Point: 4.9630
>NTDB_id=1010538 ABRA92_RS02895 WP_140275345.1 585298..585717(-) (pilA) [Vibrio parahaemolyticus strain VP93]
MKQSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVARSEAASGLGSIKSLVTPAELFYQENGTAAAATLAQLGVDG
AANDLGAITSTVANGVASLVFTFNANSSMTGETVTLTRSVAEGWTCAPSANVPALDGCR
MKQSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVARSEAASGLGSIKSLVTPAELFYQENGTAAAATLAQLGVDG
AANDLGAITSTVANGVASLVFTFNANSSMTGETVTLTRSVAEGWTCAPSANVPALDGCR
Nucleotide
Download Length: 420 bp
>NTDB_id=1010538 ABRA92_RS02895 WP_140275345.1 585298..585717(-) (pilA) [Vibrio parahaemolyticus strain VP93]
ATGAAACAGAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGTGTATT
GTCCGCAATTGCAGTTCCTGCATACCAAAACTATGTAGCTAGAAGTGAAGCGGCATCAGGACTTGGTAGTATAAAGTCCT
TAGTTACCCCAGCAGAGCTGTTCTATCAGGAAAATGGCACCGCTGCAGCTGCAACACTAGCCCAACTTGGGGTTGACGGT
GCAGCTAATGATCTAGGTGCAATAACATCAACAGTAGCGAATGGAGTAGCAAGTTTAGTATTTACGTTCAATGCAAACAG
CTCAATGACAGGTGAAACAGTAACGTTGACTCGGTCTGTTGCTGAAGGTTGGACATGTGCACCAAGTGCAAACGTTCCTG
CATTAGACGGCTGTCGATAA
ATGAAACAGAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGTGTATT
GTCCGCAATTGCAGTTCCTGCATACCAAAACTATGTAGCTAGAAGTGAAGCGGCATCAGGACTTGGTAGTATAAAGTCCT
TAGTTACCCCAGCAGAGCTGTTCTATCAGGAAAATGGCACCGCTGCAGCTGCAACACTAGCCCAACTTGGGGTTGACGGT
GCAGCTAATGATCTAGGTGCAATAACATCAACAGTAGCGAATGGAGTAGCAAGTTTAGTATTTACGTTCAATGCAAACAG
CTCAATGACAGGTGAAACAGTAACGTTGACTCGGTCTGTTGCTGAAGGTTGGACATGTGCACCAAGTGCAAACGTTCCTG
CATTAGACGGCTGTCGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
70.29 |
99.281 |
0.698 |
| pilA | Pseudomonas aeruginosa PAK |
47.761 |
96.403 |
0.46 |
| pilA/pilA1 | Eikenella corrodens VA1 |
41.429 |
100 |
0.417 |
| pilA | Acinetobacter baumannii strain A118 |
41.86 |
92.806 |
0.388 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.259 |
97.122 |
0.381 |
| pilA | Vibrio cholerae strain A1552 |
39.259 |
97.122 |
0.381 |
| pilA | Vibrio cholerae C6706 |
39.259 |
97.122 |
0.381 |
| pilA2 | Legionella pneumophila str. Paris |
43.089 |
88.489 |
0.381 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
42.276 |
88.489 |
0.374 |