Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABRA92_RS02885 Genome accession   NZ_CP158305
Coordinates   582360..583583 (-) Length   407 a.a.
NCBI ID   WP_218763322.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP93     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 577360..588583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRA92_RS02845 rpsP 577473..577721 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  ABRA92_RS02850 rimM 577750..578298 (+) 549 WP_005462552.1 ribosome maturation factor RimM -
  ABRA92_RS02855 trmD 578326..579069 (+) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABRA92_RS02860 rplS 579111..579464 (+) 354 WP_005462554.1 50S ribosomal protein L19 -
  ABRA92_RS02865 yacG 579780..579974 (-) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  ABRA92_RS02870 zapD 580043..580783 (-) 741 WP_023624252.1 cell division protein ZapD -
  ABRA92_RS02875 coaE 580811..581425 (-) 615 WP_005480887.1 dephospho-CoA kinase -
  ABRA92_RS02880 pilD 581426..582295 (-) 870 WP_031830116.1 A24 family peptidase Machinery gene
  ABRA92_RS02885 pilC 582360..583583 (-) 1224 WP_218763322.1 type II secretion system F family protein Machinery gene
  ABRA92_RS02890 pilB 583607..585292 (-) 1686 WP_350225701.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABRA92_RS02895 pilA 585298..585717 (-) 420 WP_140275345.1 pilin Machinery gene
  ABRA92_RS02900 nadC 585981..586868 (-) 888 WP_025442237.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ABRA92_RS02905 ampD 586961..587512 (+) 552 WP_005462574.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45206.36 Da        Isoelectric Point: 10.4368

>NTDB_id=1010536 ABRA92_RS02885 WP_218763322.1 582360..583583(-) (pilC) [Vibrio parahaemolyticus strain VP93]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEVEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISVFISA
RVLSKRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1010536 ABRA92_RS02885 WP_218763322.1 582360..583583(-) (pilC) [Vibrio parahaemolyticus strain VP93]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGAAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAGTCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGAAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTA
GTAACCGGTGTGCCGCTAGTACAAGCATTAAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGCAACCATTTTGACCCGCTAT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCTACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGCGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCAGTGTATTTATCTCCGCG
AGAGTACTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACCCTCGCTACGAGCTTTACGGCGGGCATTCCGATTTTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTGGTCACAGCAATGTACTTACCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.749

100

0.857
  pilC Vibrio cholerae strain A1552

74.074

99.509

0.737
  pilC Acinetobacter baylyi ADP1

43

98.28

0.423
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilC Legionella pneumophila strain ERS1305867

39.803

100

0.398

Multiple sequence alignment