Detailed information NTG1010535

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABRA92_RS02880
• Genome accession: NZ_CP158305
• Coordinates: 581426..582295 (-)
• Length: 289 a.a.
• NCBI ID: WP_031830116.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain VP93
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 576426..587295

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRA92_RS02845	rpsP	577473..577721 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
ABRA92_RS02850	rimM	577750..578298 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
ABRA92_RS02855	trmD	578326..579069 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ABRA92_RS02860	rplS	579111..579464 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
ABRA92_RS02865	yacG	579780..579974 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
ABRA92_RS02870	zapD	580043..580783 (-)	741	WP_023624252.1	cell division protein ZapD	-
ABRA92_RS02875	coaE	580811..581425 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
ABRA92_RS02880	pilD	581426..582295 (-)	870	WP_031830116.1	A24 family peptidase	Machinery gene
ABRA92_RS02885	pilC	582360..583583 (-)	1224	WP_218763322.1	type II secretion system F family protein	Machinery gene
ABRA92_RS02890	pilB	583607..585292 (-)	1686	WP_350225701.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABRA92_RS02895	pilA	585298..585717 (-)	420	WP_140275345.1	pilin	Machinery gene
ABRA92_RS02900	nadC	585981..586868 (-)	888	WP_025442237.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32403.47 Da
• Isoelectric Point: 7.1971

>NTDB_id=1010535 ABRA92_RS02880 WP_031830116.1 581426..582295(-) (pilD) [Vibrio parahaemolyticus strain VP93]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWSGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLSALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=1010535 ABRA92_RS02880 WP_031830116.1 581426..582295(-) (pilD) [Vibrio parahaemolyticus strain VP93]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCTGACCAATTAACATTACCA
TTAACTTGGTCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGGATGGGTTACGGTGATTTTA
AATTGCTGTCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATTGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.581	100	0.886
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446