Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABFV67_RS13710 Genome accession   NZ_CP158116
Coordinates   2989483..2990613 (+) Length   376 a.a.
NCBI ID   WP_187985339.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain IS021     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2984483..2995613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV67_RS13690 (ABFV67_13685) rsmB 2985405..2986685 (-) 1281 WP_158137562.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ABFV67_RS13695 (ABFV67_13690) fmt 2986742..2987689 (-) 948 WP_332396981.1 methionyl-tRNA formyltransferase -
  ABFV67_RS13700 (ABFV67_13695) def 2987708..2988220 (-) 513 WP_004397567.1 peptide deformylase -
  ABFV67_RS13705 (ABFV67_13700) - 2988360..2989475 (+) 1116 WP_187985668.1 LysM peptidoglycan-binding domain-containing protein -
  ABFV67_RS13710 (ABFV67_13705) dprA 2989483..2990613 (+) 1131 WP_187985339.1 DNA-processing protein DprA Machinery gene
  ABFV67_RS13715 (ABFV67_13710) - 2990610..2991086 (+) 477 WP_154169673.1 DUF494 family protein -
  ABFV67_RS13720 (ABFV67_13715) - 2991093..2991665 (+) 573 WP_161439021.1 type I DNA topoisomerase -
  ABFV67_RS13725 (ABFV67_13720) mioC 2991685..2992125 (-) 441 WP_332396980.1 FMN-binding protein MioC -
  ABFV67_RS13730 (ABFV67_13725) - 2992476..2992865 (+) 390 WP_154169677.1 response regulator -
  ABFV67_RS13735 (ABFV67_13730) - 2992858..2994528 (+) 1671 WP_350006927.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41223.24 Da        Isoelectric Point: 6.4957

>NTDB_id=1009840 ABFV67_RS13710 WP_187985339.1 2989483..2990613(+) (dprA) [Vibrio metschnikovii strain IS021]
MPTDQHDLTIWLALSFTPKLTQKNLSRLLSRDALTNLAGYTAQQWLALGLTAQQVDYLLNQGKKDVEQCLIWQQQAAQRH
IIPLYDEVNYPPLLREIPSPPKVLFVEGQRHWLKQPQIAIVGSRNATIDNQHIAQQFAGELAAHNIVITSGLALGIDGYA
HDGALKAGGATLAVLGSGLNCIYPTRHKTLAERIKDNGALISEFRPNTPPRAEHFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYAIEQGRDVFVIPGPITSTNSQGSNQLIRQGACLVQTVEDILAEVENLLNWCKDSPSSTQGELFCCPNDEEQLPF
PELLANVGVEATPVDILAQRTHIPVQEVMMQLLELELLGHVVAVSGGYIRKGRGKL

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1009840 ABFV67_RS13710 WP_187985339.1 2989483..2990613(+) (dprA) [Vibrio metschnikovii strain IS021]
ATGCCAACCGACCAACACGATTTAACCATCTGGCTCGCACTCAGTTTTACGCCTAAGTTAACCCAAAAAAACTTAAGCCG
ATTACTGAGTCGTGATGCATTGACTAACCTTGCGGGTTACACCGCCCAACAATGGCTGGCTCTGGGATTAACCGCTCAAC
AAGTGGATTATCTGCTTAACCAAGGTAAGAAGGACGTTGAACAGTGTTTAATCTGGCAACAACAAGCTGCACAGCGTCAT
ATCATCCCTCTCTATGATGAAGTCAATTATCCTCCGTTATTGCGTGAAATTCCCTCGCCCCCCAAAGTACTGTTTGTTGA
AGGACAACGGCACTGGTTAAAACAACCTCAAATCGCTATTGTCGGCAGTCGTAATGCGACGATTGATAATCAACATATCG
CTCAACAATTTGCCGGTGAATTAGCCGCGCACAATATAGTGATCACCAGTGGACTGGCTTTAGGCATTGATGGTTATGCG
CATGATGGAGCGCTGAAAGCTGGGGGAGCAACCCTCGCAGTATTAGGCTCTGGACTGAATTGTATTTATCCCACACGGCA
TAAAACGCTTGCGGAGCGGATCAAAGATAATGGCGCATTAATTTCTGAGTTTCGTCCTAATACGCCACCACGTGCCGAAC
ATTTTCCACGACGCAATCGCATTATCAGTGGCTTATCTCTTGGGGTGTTGGTTGTAGAAGCCGCTGAAAAAAGCGGCTCA
TTAATCACCGCCCGCTACGCAATAGAACAAGGACGAGACGTTTTTGTGATTCCCGGCCCGATCACGAGTACCAATAGCCA
AGGCAGTAATCAGTTGATCCGTCAAGGTGCCTGTCTCGTACAGACTGTTGAGGATATTTTGGCAGAAGTAGAAAACCTGC
TCAATTGGTGCAAAGATTCACCCTCTAGCACACAAGGTGAACTTTTTTGTTGCCCAAATGATGAAGAACAATTGCCATTT
CCCGAGCTGTTAGCTAACGTAGGAGTAGAAGCGACACCAGTTGATATTCTGGCACAACGGACCCATATCCCCGTGCAAGA
AGTCATGATGCAGCTACTAGAGTTAGAGCTTTTAGGCCATGTTGTTGCCGTTTCCGGTGGCTATATTCGTAAGGGGAGAG
GCAAGCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(84-281)

DprA winged helix domain (DprA_WH)

(322-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

62.873

98.138

0.617
  dprA Vibrio campbellii strain DS40M4

59.517

99.202

0.59
  dprA Glaesserella parasuis strain SC1401

44.562

100

0.447
  dprA Acinetobacter baylyi ADP1

40.16

100

0.402
  dprA Acinetobacter baumannii D1279779

40.541

98.404

0.399
  dprA Acinetobacter baumannii strain A118

40.27

98.404

0.396
  dprA Neisseria meningitidis strain C311

37.436

100

0.388
  dprA Neisseria meningitidis MC58

37.436

100

0.388
  dprA Haemophilus influenzae Rd KW20

43.195

89.894

0.388
  dprA Legionella pneumophila strain ERS1305867

44.648

86.968

0.388
  dprA Neisseria gonorrhoeae strain FA1090

35.567

100

0.367
  dprA Neisseria gonorrhoeae MS11

35.567

100

0.367

Multiple sequence alignment