Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | P303_RS00190 | Genome accession | NZ_CP006740 |
| Coordinates | 5930..6364 (-) | Length | 144 a.a. |
| NCBI ID | WP_038228615.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa MUL0034 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 930..11364
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P303_RS00180 (P303_00185) | - | 1851..3263 (+) | 1413 | WP_020851962.1 | sigma-54 dependent transcriptional regulator | - |
| P303_RS00185 (P303_00190) | pilB | 3357..5090 (-) | 1734 | WP_012338105.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| P303_RS00190 (P303_00195) | pilA | 5930..6364 (-) | 435 | WP_038228615.1 | pilin | Machinery gene |
| P303_RS12135 (P303_00200) | - | 7197..7424 (+) | 228 | WP_012338102.1 | hypothetical protein | - |
| P303_RS00195 (P303_00205) | pilA | 7669..8115 (-) | 447 | WP_040123054.1 | pilin | Machinery gene |
| P303_RS00205 (P303_00210) | pilC | 8556..9758 (+) | 1203 | WP_010894959.1 | type II secretion system F family protein | Machinery gene |
| P303_RS00210 (P303_00215) | pilD | 9765..10628 (+) | 864 | WP_004084594.1 | A24 family peptidase | Machinery gene |
| P303_RS00215 (P303_00220) | coaE | 10640..11263 (+) | 624 | WP_040123056.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 14996.38 Da Isoelectric Point: 8.5024
>NTDB_id=100975 P303_RS00190 WP_038228615.1 5930..6364(-) (pilA) [Xylella fastidiosa MUL0034]
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVARSQVTAGLAEITPSKAQAEIRIAEARPTTVSTDIGLRTPTSRCAV
AVDIKTDAESTITCTLIGNTQVNGQTIKLSRAVDNAAGTGGLWTCTTTVAEALAPGGCTSTKKS
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVARSQVTAGLAEITPSKAQAEIRIAEARPTTVSTDIGLRTPTSRCAV
AVDIKTDAESTITCTLIGNTQVNGQTIKLSRAVDNAAGTGGLWTCTTTVAEALAPGGCTSTKKS
Nucleotide
Download Length: 435 bp
>NTDB_id=100975 P303_RS00190 WP_038228615.1 5930..6364(-) (pilA) [Xylella fastidiosa MUL0034]
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATTGCCATCCTGGCCGCGATCGCTCT
GCCCATGTACCAAAATTATGTCGCCAGGTCTCAAGTCACAGCGGGACTGGCCGAAATTACACCCAGCAAAGCACAAGCCG
AAATCCGTATTGCCGAGGCAAGACCAACAACTGTTTCGACCGATATCGGACTGCGCACCCCAACGTCTCGTTGCGCCGTT
GCTGTCGACATCAAGACCGATGCTGAAAGCACAATTACATGTACGCTTATTGGTAATACCCAAGTCAACGGTCAAACCAT
TAAGTTGAGTCGCGCCGTCGATAACGCCGCAGGCACAGGGGGTCTGTGGACCTGTACCACAACCGTTGCCGAAGCGTTGG
CACCAGGAGGCTGCACTTCGACCAAGAAGAGCTAA
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATTGCCATCCTGGCCGCGATCGCTCT
GCCCATGTACCAAAATTATGTCGCCAGGTCTCAAGTCACAGCGGGACTGGCCGAAATTACACCCAGCAAAGCACAAGCCG
AAATCCGTATTGCCGAGGCAAGACCAACAACTGTTTCGACCGATATCGGACTGCGCACCCCAACGTCTCGTTGCGCCGTT
GCTGTCGACATCAAGACCGATGCTGAAAGCACAATTACATGTACGCTTATTGGTAATACCCAAGTCAACGGTCAAACCAT
TAAGTTGAGTCGCGCCGTCGATAACGCCGCAGGCACAGGGGGTCTGTGGACCTGTACCACAACCGTTGCCGAAGCGTTGG
CACCAGGAGGCTGCACTTCGACCAAGAAGAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
46.897 |
100 |
0.472 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
47.887 |
98.611 |
0.472 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
47.143 |
97.222 |
0.458 |
| pilA | Pseudomonas aeruginosa PAK |
41.026 |
100 |
0.444 |
| pilA | Vibrio cholerae C6706 |
38.854 |
100 |
0.424 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.854 |
100 |
0.424 |
| pilA | Vibrio cholerae strain A1552 |
38.854 |
100 |
0.424 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
37.179 |
100 |
0.403 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
39.286 |
97.222 |
0.382 |
| comP | Acinetobacter baylyi ADP1 |
35.333 |
100 |
0.368 |