Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QUF17_RS27625 Genome accession   NZ_AP027417
Coordinates   4989627..4990256 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC361 isolate EC361     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4984627..4995256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF17_RS27605 (MUTS5_53160) ycbZ 4985028..4986788 (-) 1761 WP_000156526.1 Lon protease family protein -
  QUF17_RS27610 (MUTS5_53170) matP 4986974..4987426 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QUF17_RS27615 (MUTS5_53180) ompA 4987502..4988542 (-) 1041 WP_000750416.1 porin OmpA -
  QUF17_RS27620 (MUTS5_53200) sulA 4988899..4989408 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QUF17_RS27625 (MUTS5_53210) sxy/tfoX 4989627..4990256 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QUF17_RS27630 (MUTS5_53220) yccS 4990219..4992381 (-) 2163 WP_000875020.1 YccS family putative transporter -
  QUF17_RS27635 (MUTS5_53230) yccF 4992391..4992837 (-) 447 WP_001261231.1 YccF domain-containing protein -
  QUF17_RS27640 (MUTS5_53240) helD 4992960..4995014 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=100978 QUF17_RS27625 WP_000839153.1 4989627..4990256(+) (sxy/tfoX) [Escherichia coli strain EC361 isolate EC361]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=100978 QUF17_RS27625 WP_000839153.1 4989627..4990256(+) (sxy/tfoX) [Escherichia coli strain EC361 isolate EC361]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment