Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ABK447_RS02315 Genome accession   NZ_CP157943
Coordinates   438828..439169 (+) Length   113 a.a.
NCBI ID   WP_094031351.1    Uniprot ID   -
Organism   Bacillus sp. hwrm1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 433828..444169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK447_RS02280 (ABK447_02275) - 433950..434747 (+) 798 WP_007614310.1 flagellar hook-basal body protein -
  ABK447_RS02285 (ABK447_02280) - 434772..435593 (+) 822 WP_012118640.1 flagellar hook-basal body protein -
  ABK447_RS02290 (ABK447_02285) - 435611..436675 (-) 1065 WP_040238774.1 tetratricopeptide repeat protein -
  ABK447_RS02295 (ABK447_02290) fabZ 436871..437296 (+) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ABK447_RS02300 (ABK447_02295) mscL 437353..437748 (+) 396 WP_015418395.1 large conductance mechanosensitive channel protein MscL -
  ABK447_RS02305 (ABK447_02300) - 437794..438204 (-) 411 WP_012118638.1 YwpF-like family protein -
  ABK447_RS02310 (ABK447_02305) - 438377..438730 (+) 354 WP_003151247.1 hypothetical protein -
  ABK447_RS02315 (ABK447_02310) ssbB 438828..439169 (+) 342 WP_094031351.1 single-stranded DNA-binding protein Machinery gene
  ABK447_RS02320 (ABK447_02315) - 439378..440160 (+) 783 WP_003151250.1 DeoR/GlpR family DNA-binding transcription regulator -
  ABK447_RS02325 (ABK447_02320) - 440157..441014 (+) 858 WP_094031350.1 Cof-type HAD-IIB family hydrolase -
  ABK447_RS02330 (ABK447_02325) - 441127..443901 (-) 2775 WP_094031349.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12616.53 Da        Isoelectric Point: 9.5812

>NTDB_id=1009158 ABK447_RS02315 WP_094031351.1 438828..439169(+) (ssbB) [Bacillus sp. hwrm1]
MFNHVMLVGRLTKDPDLRFTAAGIPVAHITLAVNRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRILTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=1009158 ABK447_RS02315 WP_094031351.1 438828..439169(+) (ssbB) [Bacillus sp. hwrm1]
TTGTTTAACCACGTTATGCTTGTCGGCCGGCTGACGAAAGACCCGGATCTCCGTTTTACAGCAGCGGGCATTCCCGTCGC
GCATATTACGTTGGCGGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTCGTCAACTGTACCATCT
GGAGAAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCTGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.106

100

0.761
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.66

93.805

0.522
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

93.805

0.487
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.018

100

0.46
  ssbA Streptococcus mutans UA159

41.593

100

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

39.823

100

0.398
  ssbB/cilA Streptococcus pneumoniae D39

39.823

100

0.398
  ssbB/cilA Streptococcus pneumoniae R6

39.823

100

0.398
  ssbB/cilA Streptococcus mitis SK321

39.823

100

0.398
  ssbB Lactococcus lactis subsp. cremoris KW2

36.607

99.115

0.363

Multiple sequence alignment