Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   ABKA15_RS01435 Genome accession   NZ_CP157941
Coordinates   277803..278198 (+) Length   131 a.a.
NCBI ID   WP_049513167.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_010     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 272803..283198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA15_RS01405 (ABKA15_01400) - 273189..274493 (+) 1305 WP_065428426.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ABKA15_RS01410 (ABKA15_01405) - 274671..275231 (+) 561 WP_049513174.1 folate family ECF transporter S component -
  ABKA15_RS01415 (ABKA15_01410) pepA 275294..276358 (-) 1065 WP_049513173.1 glutamyl aminopeptidase -
  ABKA15_RS01420 (ABKA15_01415) - 276478..276765 (+) 288 WP_049513171.1 DUF4651 domain-containing protein -
  ABKA15_RS01425 (ABKA15_01420) - 276762..277079 (+) 318 WP_003028520.1 thioredoxin family protein -
  ABKA15_RS01430 (ABKA15_01425) ytpR 277096..277722 (+) 627 WP_049513169.1 YtpR family tRNA-binding protein -
  ABKA15_RS01435 (ABKA15_01430) ssbB/cilA 277803..278198 (+) 396 WP_049513167.1 single-stranded DNA-binding protein Machinery gene
  ABKA15_RS01440 (ABKA15_01435) - 278491..279477 (+) 987 WP_049513165.1 sugar ABC transporter substrate-binding protein -
  ABKA15_RS01445 (ABKA15_01440) - 279477..280790 (+) 1314 WP_049513164.1 sensor histidine kinase -
  ABKA15_RS01450 (ABKA15_01445) - 280783..281466 (+) 684 WP_049513162.1 response regulator transcription factor -
  ABKA15_RS01455 (ABKA15_01450) - 281463..282749 (+) 1287 WP_049513160.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14671.59 Da        Isoelectric Point: 5.9381

>NTDB_id=1009094 ABKA15_RS01435 WP_049513167.1 277803..278198(+) (ssbB/cilA) [Streptococcus sp. KHUD_010]
MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFVNVVVWGKLAETLASYASKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRAIRENNAGADLADLLLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1009094 ABKA15_RS01435 WP_049513167.1 277803..278198(+) (ssbB/cilA) [Streptococcus sp. KHUD_010]
ATGTATAATAAAGTAATTTTAATCGGTCGCTTGGTGAATACACCAGAGTTAAACAAAACAGCTAATGATAAATCTGTGGC
GCGTGCAACACTTGCGGTCAATCGTCGCTACAAAGGACAAAATGGTGAACGAGAAGCAGACTTCGTCAATGTCGTTGTTT
GGGGCAAGTTAGCCGAAACATTGGCAAGTTATGCAAGTAAAGGCAGCTTGATTTCACTAGACGGCGAACTTCGCACTCGC
CGTTATGAGAAGGACGGAGTGACGCATTATGTCACAGAAGTGCTTTGCAATGGTTTCCAGCTATTAGAAAGCCGTGCACA
GCGAGCTATTCGTGAGAATAATGCTGGTGCAGATTTGGCAGACTTGCTTCTGGAAGAAGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.969

100

0.84
  ssbB/cilA Streptococcus mitis NCTC 12261

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae Rx1

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae D39

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae R6

83.206

100

0.832
  ssbB/cilA Streptococcus mitis SK321

83.206

100

0.832
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.809

100

0.748
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

44.068

90.076

0.397
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374

Multiple sequence alignment