Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   ABKA15_RS01285 Genome accession   NZ_CP157941
Coordinates   247112..247540 (+) Length   142 a.a.
NCBI ID   WP_049507639.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_010     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 242112..252540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA15_RS01255 (ABKA15_01250) - 242577..242957 (+) 381 WP_350015362.1 MerR family transcriptional regulator -
  ABKA15_RS01260 (ABKA15_01255) glnA 242968..244310 (+) 1343 Protein_245 type I glutamate--ammonia ligase -
  ABKA15_RS01265 (ABKA15_01260) - 244498..244863 (+) 366 WP_049507022.1 DUF1033 family protein -
  ABKA15_RS01270 (ABKA15_01265) comYA 244933..245874 (+) 942 WP_049513218.1 competence type IV pilus ATPase ComGA Machinery gene
  ABKA15_RS01275 (ABKA15_01270) comYB 245816..246838 (+) 1023 WP_185952230.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABKA15_RS01280 (ABKA15_01275) comYC 246835..247152 (+) 318 WP_003028473.1 competence type IV pilus major pilin ComGC Machinery gene
  ABKA15_RS01285 (ABKA15_01280) comYD 247112..247540 (+) 429 WP_049507639.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABKA15_RS01290 (ABKA15_01285) comGE/cglE 247512..247805 (+) 294 WP_049513214.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABKA15_RS01295 (ABKA15_01290) comGF/cglF 247789..248226 (+) 438 WP_049513212.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABKA15_RS01300 (ABKA15_01295) comGG 248207..248533 (+) 327 WP_264340993.1 competence type IV pilus minor pilin ComGG -
  ABKA15_RS01305 (ABKA15_01300) comYH 248605..249558 (+) 954 WP_049513210.1 class I SAM-dependent methyltransferase Machinery gene
  ABKA15_RS01310 (ABKA15_01305) - 249605..250804 (+) 1200 WP_049513208.1 acetate kinase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16224.60 Da        Isoelectric Point: 10.1252

>NTDB_id=1009088 ABKA15_RS01285 WP_049507639.1 247112..247540(+) (comYD) [Streptococcus sp. KHUD_010]
MRNIQKKLVPLQIKGFTLLESLLTLFITSFLLLAVSGSVRSSFEQVEEQIFFLEFEHFYRESQKLSSSGQSQLDMNFSRE
RISNGYNHLAVPHSIQAPEDLTLHFDKAGGNSSLGKIVFQTKKQTVTYQLYLGNGKFKKTTR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1009088 ABKA15_RS01285 WP_049507639.1 247112..247540(+) (comYD) [Streptococcus sp. KHUD_010]
ATGCGAAACATACAAAAGAAGCTCGTTCCGTTGCAGATTAAGGGATTTACGCTTTTGGAAAGTTTGCTGACTTTATTTAT
AACGAGTTTCTTATTGCTTGCTGTGTCGGGCTCTGTTCGTTCTTCTTTTGAACAGGTGGAAGAGCAGATTTTCTTTCTGG
AGTTTGAGCATTTTTATCGGGAAAGTCAGAAGTTGAGTAGTTCAGGTCAAAGTCAATTGGACATGAATTTTTCTCGCGAG
AGGATTTCCAATGGTTACAACCATTTGGCGGTTCCTCATTCGATTCAAGCGCCAGAAGATTTGACGCTTCATTTTGATAA
GGCAGGTGGTAATTCATCGCTCGGAAAGATTGTCTTTCAGACAAAAAAGCAGACAGTTACGTATCAATTATATCTAGGAA
ATGGAAAATTTAAGAAAACAACACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus gordonii str. Challis substr. CH1

63.704

95.07

0.606
  comGD/cglD Streptococcus mitis NCTC 12261

57.692

91.549

0.528
  comGD/cglD Streptococcus mitis SK321

56.693

89.437

0.507
  comGD/cglD Streptococcus pneumoniae Rx1

56.693

89.437

0.507
  comGD/cglD Streptococcus pneumoniae D39

56.693

89.437

0.507
  comGD/cglD Streptococcus pneumoniae R6

56.693

89.437

0.507
  comGD/cglD Streptococcus pneumoniae TIGR4

55.906

89.437

0.5
  comYD Streptococcus mutans UA140

53.846

91.549

0.493
  comYD Streptococcus mutans UA159

53.846

91.549

0.493

Multiple sequence alignment