Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | ABKA15_RS01305 | Genome accession | NZ_CP157941 |
| Coordinates | 248605..249558 (+) | Length | 317 a.a. |
| NCBI ID | WP_049513210.1 | Uniprot ID | A0AAU7PY96 |
| Organism | Streptococcus sp. KHUD_010 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 243605..254558
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABKA15_RS01265 (ABKA15_01260) | - | 244498..244863 (+) | 366 | WP_049507022.1 | DUF1033 family protein | - |
| ABKA15_RS01270 (ABKA15_01265) | comYA | 244933..245874 (+) | 942 | WP_049513218.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ABKA15_RS01275 (ABKA15_01270) | comYB | 245816..246838 (+) | 1023 | WP_185952230.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ABKA15_RS01280 (ABKA15_01275) | comYC | 246835..247152 (+) | 318 | WP_003028473.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ABKA15_RS01285 (ABKA15_01280) | comYD | 247112..247540 (+) | 429 | WP_049507639.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ABKA15_RS01290 (ABKA15_01285) | comGE/cglE | 247512..247805 (+) | 294 | WP_049513214.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| ABKA15_RS01295 (ABKA15_01290) | comGF/cglF | 247789..248226 (+) | 438 | WP_049513212.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| ABKA15_RS01300 (ABKA15_01295) | comGG | 248207..248533 (+) | 327 | WP_264340993.1 | competence type IV pilus minor pilin ComGG | - |
| ABKA15_RS01305 (ABKA15_01300) | comYH | 248605..249558 (+) | 954 | WP_049513210.1 | class I SAM-dependent methyltransferase | Machinery gene |
| ABKA15_RS01310 (ABKA15_01305) | - | 249605..250804 (+) | 1200 | WP_049513208.1 | acetate kinase | - |
| ABKA15_RS01315 (ABKA15_01310) | glmS | 251197..253011 (+) | 1815 | WP_049513230.1 | glutamine--fructose-6-phosphate transaminase (isomerizing) | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35818.62 Da Isoelectric Point: 4.3329
>NTDB_id=1009091 ABKA15_RS01305 WP_049513210.1 248605..249558(+) (comYH) [Streptococcus sp. KHUD_010]
MNFEKIEQAYALLLENVQEIQNELLTNFYDALVEQNGIYLDGNTEQATVKKNNETLKSLKLSKEEWRRAYQFLLMKAAQT
EPLQANHQFTPDSIGFILTFLIDQLVKKGHIDILEIGSGMGNLAETILNNTQKNVDYLGLELDDLLIDISASIADVMDAK
VSFVQGDAVRPQVLKESDVIISDLPVGFYPDDSIAARYEVASTQEHTYAHHLLMEQSLKYLKSGGYAIFLAPNDLLTSSQ
SDLLKTWLQKHAQIVAMIALPESLFGNAAYAKTIFVLKKQEEQAVQPFVYALSDLQDQNDLLEFSEKFQNWSRESEI
MNFEKIEQAYALLLENVQEIQNELLTNFYDALVEQNGIYLDGNTEQATVKKNNETLKSLKLSKEEWRRAYQFLLMKAAQT
EPLQANHQFTPDSIGFILTFLIDQLVKKGHIDILEIGSGMGNLAETILNNTQKNVDYLGLELDDLLIDISASIADVMDAK
VSFVQGDAVRPQVLKESDVIISDLPVGFYPDDSIAARYEVASTQEHTYAHHLLMEQSLKYLKSGGYAIFLAPNDLLTSSQ
SDLLKTWLQKHAQIVAMIALPESLFGNAAYAKTIFVLKKQEEQAVQPFVYALSDLQDQNDLLEFSEKFQNWSRESEI
Nucleotide
Download Length: 954 bp
>NTDB_id=1009091 ABKA15_RS01305 WP_049513210.1 248605..249558(+) (comYH) [Streptococcus sp. KHUD_010]
ATGAATTTTGAAAAAATTGAACAGGCCTATGCGCTCTTGTTAGAAAATGTCCAAGAAATCCAAAATGAGCTTTTGACGAA
TTTTTATGATGCTTTGGTAGAGCAAAATGGGATTTATCTAGATGGAAATACAGAGCAAGCTACTGTCAAAAAAAATAATG
AAACTCTTAAATCTTTGAAATTAAGCAAAGAAGAATGGCGTCGAGCCTATCAATTTTTGCTGATGAAAGCAGCTCAAACA
GAGCCTTTACAAGCCAATCATCAATTCACTCCGGATTCCATTGGGTTTATTTTGACCTTTCTCATTGATCAATTGGTTAA
AAAAGGACACATTGATATTTTGGAAATTGGTAGCGGAATGGGGAATTTAGCCGAGACAATTCTCAATAATACACAAAAAA
ATGTGGATTATCTGGGGCTGGAATTGGACGATCTGCTAATTGATATATCAGCCAGTATCGCAGATGTGATGGACGCAAAA
GTTAGTTTTGTGCAAGGTGACGCAGTGCGCCCGCAAGTATTGAAAGAAAGCGATGTGATTATTAGCGATTTACCAGTTGG
CTTTTATCCTGATGATAGCATTGCGGCGCGCTATGAAGTGGCTAGTACACAGGAGCATACTTATGCTCATCATCTGTTAA
TGGAGCAATCACTCAAGTATCTCAAATCAGGTGGCTATGCTATTTTTCTTGCACCGAATGATTTATTGACTAGTTCGCAA
AGTGATTTGCTGAAAACTTGGCTGCAAAAGCATGCGCAGATAGTTGCGATGATTGCATTACCAGAGTCTCTTTTTGGAAA
TGCCGCTTATGCTAAGACAATTTTTGTGCTGAAAAAGCAAGAAGAACAAGCTGTTCAACCGTTTGTTTATGCTTTGTCCG
ATTTGCAAGATCAGAACGATTTATTGGAATTTAGCGAAAAGTTTCAAAATTGGAGCAGAGAAAGTGAAATTTAA
ATGAATTTTGAAAAAATTGAACAGGCCTATGCGCTCTTGTTAGAAAATGTCCAAGAAATCCAAAATGAGCTTTTGACGAA
TTTTTATGATGCTTTGGTAGAGCAAAATGGGATTTATCTAGATGGAAATACAGAGCAAGCTACTGTCAAAAAAAATAATG
AAACTCTTAAATCTTTGAAATTAAGCAAAGAAGAATGGCGTCGAGCCTATCAATTTTTGCTGATGAAAGCAGCTCAAACA
GAGCCTTTACAAGCCAATCATCAATTCACTCCGGATTCCATTGGGTTTATTTTGACCTTTCTCATTGATCAATTGGTTAA
AAAAGGACACATTGATATTTTGGAAATTGGTAGCGGAATGGGGAATTTAGCCGAGACAATTCTCAATAATACACAAAAAA
ATGTGGATTATCTGGGGCTGGAATTGGACGATCTGCTAATTGATATATCAGCCAGTATCGCAGATGTGATGGACGCAAAA
GTTAGTTTTGTGCAAGGTGACGCAGTGCGCCCGCAAGTATTGAAAGAAAGCGATGTGATTATTAGCGATTTACCAGTTGG
CTTTTATCCTGATGATAGCATTGCGGCGCGCTATGAAGTGGCTAGTACACAGGAGCATACTTATGCTCATCATCTGTTAA
TGGAGCAATCACTCAAGTATCTCAAATCAGGTGGCTATGCTATTTTTCTTGCACCGAATGATTTATTGACTAGTTCGCAA
AGTGATTTGCTGAAAACTTGGCTGCAAAAGCATGCGCAGATAGTTGCGATGATTGCATTACCAGAGTCTCTTTTTGGAAA
TGCCGCTTATGCTAAGACAATTTTTGTGCTGAAAAAGCAAGAAGAACAAGCTGTTCAACCGTTTGTTTATGCTTTGTCCG
ATTTGCAAGATCAGAACGATTTATTGGAATTTAGCGAAAAGTTTCAAAATTGGAGCAGAGAAAGTGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
61.27 |
99.369 |
0.609 |
| comYH | Streptococcus mutans UA159 |
60.952 |
99.369 |
0.606 |