Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   ABKJ27_RS07510 Genome accession   NZ_CP157578
Coordinates   1568571..1568966 (-) Length   131 a.a.
NCBI ID   WP_000282442.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1563571..1573966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS07485 (ABKJ27_07500) recX 1564020..1564796 (+) 777 WP_410011620.1 recombination regulator RecX -
  ABKJ27_RS07490 (ABKJ27_07505) - 1564885..1565417 (+) 533 Protein_1455 DUF402 domain-containing protein -
  ABKJ27_RS07495 (ABKJ27_07510) - 1565488..1566255 (-) 768 WP_000567567.1 epoxyqueuosine reductase QueH -
  ABKJ27_RS07500 (ABKJ27_07515) groL 1566378..1568000 (-) 1623 WP_020902493.1 chaperonin GroEL -
  ABKJ27_RS07505 (ABKJ27_07520) groES 1568019..1568300 (-) 282 WP_247930826.1 co-chaperone GroES -
  ABKJ27_RS07510 (ABKJ27_07525) ssbB/cilA 1568571..1568966 (-) 396 WP_000282442.1 single-stranded DNA-binding protein Machinery gene
  ABKJ27_RS07515 (ABKJ27_07530) - 1569044..1569805 (-) 762 WP_247930825.1 SDR family NAD(P)-dependent oxidoreductase -
  ABKJ27_RS07520 (ABKJ27_07535) ytpR 1569847..1570473 (-) 627 WP_410011621.1 YtpR family tRNA-binding protein -
  ABKJ27_RS07525 (ABKJ27_07540) - 1570489..1570806 (-) 318 WP_173268111.1 thioredoxin family protein -
  ABKJ27_RS07530 (ABKJ27_07545) - 1570803..1571102 (-) 300 WP_410011622.1 DUF4651 domain-containing protein -
  ABKJ27_RS07535 (ABKJ27_07550) - 1571193..1572272 (-) 1080 WP_410011623.1 N-acetylmuramoyl-L-alanine amidase family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14907.85 Da        Isoelectric Point: 5.9409

>NTDB_id=1007473 ABKJ27_RS07510 WP_000282442.1 1568571..1568966(-) (ssbB/cilA) [Streptococcus sp. KHUD_011]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1007473 ABKJ27_RS07510 WP_000282442.1 1568571..1568966(-) (ssbB/cilA) [Streptococcus sp. KHUD_011]
ATGTATAATAAAGTTATCTTAATCGGACGCTTGACGTCTACACCAGAATTGCACAAAACCAATAATGACAAGTCAGTAGC
GCGAGCAACTATCGCTGTGAACCGTCGTTACAAAGACCAAAACGGTGAACGCGAAGCTGACTTCGTCAATATGGTCCTAT
GGGGCAGATTAGCAGAAACATTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCAGTGGATGGAGAATTACGTACCCGT
CGTTTTGAGAAAAATGGTCAAATGAATTATGTGACTGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCGGACTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

100

100

1
  ssbB/cilA Streptococcus pneumoniae Rx1

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae D39

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae R6

99.237

100

0.992
  ssbB/cilA Streptococcus mitis SK321

99.237

100

0.992
  ssbB/cilA Streptococcus mitis NCTC 12261

97.71

100

0.977
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366

Multiple sequence alignment