Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ABLB99_RS01605 Genome accession   NZ_CP157447
Coordinates   345569..346042 (+) Length   157 a.a.
NCBI ID   WP_106465172.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1727     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340569..351042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB99_RS01580 (ABLB99_01580) - 341032..343137 (-) 2106 WP_004711681.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ABLB99_RS01585 (ABLB99_01585) - 343177..343308 (-) 132 WP_102990545.1 hypothetical protein -
  ABLB99_RS01590 (ABLB99_01590) rpoZ 343347..343625 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABLB99_RS01595 (ABLB99_01595) gmk 343698..344327 (-) 630 WP_002051739.1 guanylate kinase -
  ABLB99_RS01600 (ABLB99_01600) ispH 344450..345400 (+) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABLB99_RS01605 (ABLB99_01605) fimU 345569..346042 (+) 474 WP_106465172.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABLB99_RS01610 (ABLB99_01610) pilV 346036..346596 (+) 561 WP_079377028.1 type IV pilus modification protein PilV Machinery gene
  ABLB99_RS01615 (ABLB99_01615) pilW 346596..347594 (+) 999 WP_004884688.1 PilW family protein Machinery gene
  ABLB99_RS01620 (ABLB99_01620) pilX 347591..348406 (+) 816 WP_004711686.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16870.51 Da        Isoelectric Point: 9.9267

>NTDB_id=1006915 ABLB99_RS01605 WP_106465172.1 345569..346042(+) (fimU) [Acinetobacter nosocomialis strain XH1727]
MRGITPQEGFTLVELIVTIAVMAIIAMMAAPSMSNLLESKRLDTNQRDLISTLSEAKSQAVLGRQNVSVKLNSAASNTAT
LLNWQPTSNNTLTLKNIAADNTQSSLAITTLTFNANGVVSNITQDALISICNSRINKKKNFILTKLGALVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1006915 ABLB99_RS01605 WP_106465172.1 345569..346042(+) (fimU) [Acinetobacter nosocomialis strain XH1727]
ATGAGGGGAATTACTCCGCAAGAAGGGTTCACCTTAGTGGAACTCATCGTAACAATTGCAGTCATGGCTATTATTGCAAT
GATGGCTGCGCCGTCTATGTCAAATTTATTAGAAAGTAAACGTTTAGATACTAATCAAAGAGATTTAATTAGCACTCTAT
CTGAGGCGAAAAGTCAGGCTGTGCTTGGTCGTCAGAATGTTTCAGTTAAATTGAATTCAGCGGCTTCTAATACGGCCACT
TTATTAAATTGGCAACCTACTTCTAACAACACCCTAACGCTAAAAAATATAGCTGCTGATAATACCCAAAGTTCTTTAGC
TATCACTACTTTAACATTTAACGCAAATGGAGTTGTGAGTAATATTACTCAGGATGCACTTATATCTATTTGTAATTCAA
GAATAAATAAAAAGAAAAATTTTATACTTACAAAACTTGGAGCTTTGGTTTTTAAAGCTGAGGAGACATGCTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-136)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

85.35

100

0.854

Multiple sequence alignment