Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   QUD44_RS00785 Genome accession   NZ_AP027275
Coordinates   155766..156071 (+) Length   101 a.a.
NCBI ID   WP_096368800.1    Uniprot ID   -
Organism   Lactococcus formosensis strain MS200408A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 150766..161071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD44_RS00765 (LFMS200408A_01480) - 151657..153354 (+) 1698 WP_286210748.1 S-layer homology domain-containing protein -
  QUD44_RS00770 (LFMS200408A_01490) rpsU 153483..153659 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  QUD44_RS00775 (LFMS200408A_01500) comGA 153857..154789 (+) 933 WP_286210749.1 competence type IV pilus ATPase ComGA Machinery gene
  QUD44_RS00780 (LFMS200408A_01510) comGB 154728..155747 (+) 1020 WP_269457350.1 competence type IV pilus assembly protein ComGB Machinery gene
  QUD44_RS00785 (LFMS200408A_01520) comYC 155766..156071 (+) 306 WP_096368800.1 competence type IV pilus major pilin ComGC Machinery gene
  QUD44_RS00790 comGD 156046..156462 (+) 417 WP_096368799.1 competence type IV pilus minor pilin ComGD Machinery gene
  QUD44_RS00795 comGE 156494..156727 (+) 234 WP_269457349.1 competence type IV pilus minor pilin ComGE -
  QUD44_RS00800 (LFMS200408A_01540) comGF 156714..157148 (+) 435 WP_231951074.1 competence type IV pilus minor pilin ComGF -
  QUD44_RS00805 (LFMS200408A_01550) - 157383..158228 (+) 846 WP_096368796.1 zinc ABC transporter substrate-binding protein -
  QUD44_RS00810 (LFMS200408A_01560) - 158315..159184 (-) 870 WP_096368795.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11277.22 Da        Isoelectric Point: 10.0997

>NTDB_id=100559 QUD44_RS00785 WP_096368800.1 155766..156071(+) (comYC) [Lactococcus formosensis strain MS200408A]
MEKKRFKAFTLIEMLVVLLIISVLLLLFVPNLAKEKKNIQNTGQAAVVKVVEGQAELYQLDKQDGPSLGKLVSGGLITQK
QADSYNDYYTKNPNAKRNIPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=100559 QUD44_RS00785 WP_096368800.1 155766..156071(+) (comYC) [Lactococcus formosensis strain MS200408A]
ATGGAAAAAAAGAGGTTCAAAGCTTTTACTTTAATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTTTTACTTTTATT
GTTTGTTCCAAACTTGGCTAAAGAAAAGAAGAATATCCAAAATACAGGTCAAGCAGCAGTTGTTAAAGTTGTCGAAGGGC
AAGCCGAACTTTATCAACTTGATAAACAGGATGGTCCAAGTTTAGGGAAACTTGTCTCCGGTGGGTTAATTACACAGAAG
CAAGCCGATAGCTACAATGATTATTATACTAAGAACCCTAATGCAAAACGTAATATCCCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

61.765

100

0.624
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comYC Streptococcus mutans UA140

65.263

94.059

0.614
  comYC Streptococcus mutans UA159

65.263

94.059

0.614
  comGC/cglC Streptococcus mitis SK321

62.626

98.02

0.614
  comGC/cglC Streptococcus pneumoniae D39

58.586

98.02

0.574
  comGC/cglC Streptococcus pneumoniae Rx1

58.586

98.02

0.574
  comGC/cglC Streptococcus pneumoniae R6

58.586

98.02

0.574
  comGC/cglC Streptococcus pneumoniae TIGR4

58.586

98.02

0.574
  comGC/cglC Streptococcus mitis NCTC 12261

62.637

90.099

0.564
  comYC Streptococcus suis isolate S10

58.025

80.198

0.465
  comGC Staphylococcus aureus MW2

50.633

78.218

0.396
  comGC Staphylococcus aureus N315

50.633

78.218

0.396

Multiple sequence alignment