Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QUD44_RS00790 Genome accession   NZ_AP027275
Coordinates   156046..156462 (+) Length   138 a.a.
NCBI ID   WP_096368799.1    Uniprot ID   -
Organism   Lactococcus formosensis strain MS200408A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 151046..161462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD44_RS00765 (LFMS200408A_01480) - 151657..153354 (+) 1698 WP_286210748.1 S-layer homology domain-containing protein -
  QUD44_RS00770 (LFMS200408A_01490) rpsU 153483..153659 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  QUD44_RS00775 (LFMS200408A_01500) comGA 153857..154789 (+) 933 WP_286210749.1 competence type IV pilus ATPase ComGA Machinery gene
  QUD44_RS00780 (LFMS200408A_01510) comGB 154728..155747 (+) 1020 WP_269457350.1 competence type IV pilus assembly protein ComGB Machinery gene
  QUD44_RS00785 (LFMS200408A_01520) comYC 155766..156071 (+) 306 WP_096368800.1 competence type IV pilus major pilin ComGC Machinery gene
  QUD44_RS00790 comGD 156046..156462 (+) 417 WP_096368799.1 competence type IV pilus minor pilin ComGD Machinery gene
  QUD44_RS00795 comGE 156494..156727 (+) 234 WP_269457349.1 competence type IV pilus minor pilin ComGE -
  QUD44_RS00800 (LFMS200408A_01540) comGF 156714..157148 (+) 435 WP_231951074.1 competence type IV pilus minor pilin ComGF -
  QUD44_RS00805 (LFMS200408A_01550) - 157383..158228 (+) 846 WP_096368796.1 zinc ABC transporter substrate-binding protein -
  QUD44_RS00810 (LFMS200408A_01560) - 158315..159184 (-) 870 WP_096368795.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15899.56 Da        Isoelectric Point: 10.3023

>NTDB_id=100560 QUD44_RS00790 WP_096368799.1 156046..156462(+) (comGD) [Lactococcus formosensis strain MS200408A]
MQNVISRIKALTLLESLLVLFLCSFVLFLFSSSVKQSVRIARSEIFILQFERLYKDTQRMAGLKGQRQTLSARNGTLYSQ
EEMLKVPEEAEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKRIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=100560 QUD44_RS00790 WP_096368799.1 156046..156462(+) (comGD) [Lactococcus formosensis strain MS200408A]
ATGCAAAACGTAATATCCCGAATTAAAGCTTTAACTTTACTGGAGAGTTTACTCGTTCTTTTCCTATGCTCTTTTGTTCT
TTTTCTATTTTCAAGTTCGGTGAAACAAAGTGTGAGGATAGCACGTTCAGAGATTTTTATTTTACAATTTGAACGTCTGT
ATAAGGATACCCAGCGCATGGCTGGACTAAAGGGGCAGCGACAGACATTGAGTGCGCGTAATGGCACACTATATAGCCAA
GAAGAAATGTTGAAAGTCCCAGAGGAGGCTGAAATAAATGATTTCTCTATTACTTTTGATCAAAAATCAGGCAATTCGAG
CCTACAAAAAATCACAATATTTCTTCCCTATCAGAAAAAAACGATCTCTTATCAATTGGAAATTGGAAGTGGAAAATATA
AGAAGAGAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

50

100

0.5
  comYD Streptococcus mutans UA140

40.909

95.652

0.391
  comYD Streptococcus mutans UA159

40.909

95.652

0.391
  comGD/cglD Streptococcus mitis SK321

40.31

93.478

0.377
  comGD/cglD Streptococcus pneumoniae TIGR4

39.535

93.478

0.37
  comGD/cglD Streptococcus mitis NCTC 12261

38.462

94.203

0.362

Multiple sequence alignment