Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AABA75_RS18930 Genome accession   NZ_AP027272
Coordinates   4308822..4310420 (-) Length   532 a.a.
NCBI ID   WP_338294888.1    Uniprot ID   -
Organism   Planctobacterium marinum strain Dej080120_11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4303822..4315420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA75_RS18905 (MACH26_37330) - 4303895..4304122 (+) 228 WP_338294289.1 DUF2970 domain-containing protein -
  AABA75_RS18910 (MACH26_37340) - 4304114..4304953 (-) 840 WP_338294290.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  AABA75_RS18915 (MACH26_37350) - 4305021..4307009 (-) 1989 WP_338294291.1 hypothetical protein -
  AABA75_RS18920 (MACH26_37360) aroB 4307052..4308119 (-) 1068 WP_338294292.1 3-dehydroquinate synthase -
  AABA75_RS18925 (MACH26_37370) aroK 4308146..4308661 (-) 516 WP_338294293.1 shikimate kinase AroK -
  AABA75_RS18930 (MACH26_37380) pilQ 4308822..4310420 (-) 1599 WP_338294888.1 type IV pilus secretin PilQ family protein Machinery gene
  AABA75_RS18935 (MACH26_37390) - 4310542..4311078 (-) 537 WP_338294294.1 pilus assembly protein PilP -
  AABA75_RS18940 (MACH26_37400) - 4311075..4311674 (-) 600 WP_338294295.1 type 4a pilus biogenesis protein PilO -
  AABA75_RS18945 (MACH26_37410) - 4311671..4312258 (-) 588 WP_338294296.1 PilN domain-containing protein -
  AABA75_RS18950 (MACH26_37420) pilM 4312246..4313304 (-) 1059 WP_338294297.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 532 a.a.        Molecular weight: 58023.63 Da        Isoelectric Point: 4.2183

>NTDB_id=100515 AABA75_RS18930 WP_338294888.1 4308822..4310420(-) (pilQ) [Planctobacterium marinum strain Dej080120_11]
MTTLVNIDFKQLEDGSGEVIFEFDKDDFQVVLAKEHRLLHLTLPGTSLGEGQLMRLNVSEFATPVEYIETFEDALQSSAV
FELSEDFLHSHEKQQNRLLITINAVKEADNKSQFKAQFSGEPISLDFQDVPVRQVLQIIAQVNGFNLVTTDSVEGNVTVS
LSDVPWDQALNIILRIKGLDQRMEGNILLVAPAEELAAREAQMLQSKQEAAQLAPLNTRHVQINYAKAEELALILKSPEG
GVLGSRGTATVDNRTNTIIIKDTAESINEAVQMIELLDVPVRQVLIESRMVTVRDGVDEQLGVRWGFSDRQDEDGVSGSL
VAADQLSAGTVPSIDDRLNVNLPVSSPAGRIGFTVARLVDGTILDLELSALETENKGEVIASPRITVANQHEAYIEQGTE
IPYVQATSSGATSVEFKKAVLSMMVTPHITPDNRIILDLVVTQDTRGETVSTPTGPAVAIDTQEISTQVLVENGETIVLG
GIFQQTISDADTKVPLLGDLPVLGGLFRNSQQVNDKRELLIFVTPKILTDSL

Nucleotide


Download         Length: 1599 bp        

>NTDB_id=100515 AABA75_RS18930 WP_338294888.1 4308822..4310420(-) (pilQ) [Planctobacterium marinum strain Dej080120_11]
ATGACCACATTGGTAAATATTGATTTCAAGCAACTGGAAGATGGCAGTGGTGAGGTCATATTCGAGTTTGATAAAGACGA
TTTTCAAGTTGTACTAGCTAAGGAACATCGTTTATTGCATTTAACACTGCCAGGCACCTCATTAGGCGAAGGGCAACTTA
TGCGTCTGAATGTCTCTGAATTCGCTACGCCGGTTGAATATATTGAAACCTTTGAAGATGCCTTGCAAAGCTCTGCGGTT
TTTGAACTGTCAGAGGATTTTCTGCACAGCCATGAGAAACAACAAAATCGCTTATTGATTACAATTAATGCCGTCAAGGA
AGCGGATAATAAATCACAATTCAAAGCACAGTTTTCTGGTGAGCCAATTTCTTTGGACTTCCAGGATGTGCCGGTCAGGC
AAGTGCTGCAAATTATTGCTCAGGTGAACGGTTTCAATTTGGTTACCACTGATTCGGTTGAGGGCAATGTCACAGTAAGT
TTATCTGATGTGCCATGGGATCAAGCACTGAATATCATTCTACGTATCAAAGGATTAGATCAGAGAATGGAAGGCAACAT
ATTGCTGGTGGCCCCTGCAGAGGAGCTTGCTGCTCGCGAGGCGCAAATGTTGCAATCAAAACAAGAAGCGGCTCAACTGG
CGCCACTGAATACAAGGCACGTTCAAATCAACTATGCCAAAGCTGAAGAGCTAGCGCTTATCCTCAAGTCTCCCGAAGGT
GGTGTATTAGGTAGTCGCGGCACCGCAACTGTAGATAACCGCACTAATACCATTATTATTAAGGATACAGCTGAGTCAAT
TAACGAAGCAGTGCAGATGATTGAATTACTGGATGTTCCCGTGCGTCAGGTACTGATTGAATCACGTATGGTGACCGTGC
GCGACGGCGTCGACGAACAGTTGGGAGTCCGTTGGGGCTTTAGCGACCGGCAAGATGAAGATGGCGTTTCGGGGTCTCTG
GTGGCAGCAGATCAGCTTTCCGCGGGTACCGTACCTTCAATCGATGATAGGTTGAACGTTAATTTGCCGGTTAGCTCTCC
TGCGGGGCGCATCGGTTTTACCGTAGCACGCCTGGTGGACGGTACTATTCTGGATCTGGAGCTATCCGCGCTTGAGACGG
AAAATAAAGGCGAGGTCATCGCCAGTCCCAGAATAACTGTCGCTAATCAACATGAAGCTTATATTGAACAAGGCACCGAG
ATACCTTATGTTCAAGCCACCTCCAGTGGCGCTACCTCAGTAGAATTTAAAAAAGCGGTATTAAGTATGATGGTGACGCC
CCATATTACCCCTGATAATCGCATTATTTTGGATTTAGTGGTTACCCAAGATACCCGTGGTGAGACAGTGTCTACACCCA
CTGGCCCGGCCGTTGCGATAGATACTCAGGAAATAAGCACACAGGTACTGGTGGAAAACGGCGAGACCATAGTGCTTGGC
GGTATTTTCCAGCAAACCATCTCTGATGCGGATACAAAAGTACCACTGCTGGGTGACCTACCAGTACTTGGAGGATTGTT
CAGAAACAGCCAACAAGTGAACGACAAACGGGAGCTGTTAATTTTTGTGACGCCAAAAATTCTGACGGATTCCTTGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(219-283)

Secretin and TonB N terminus short domain (STN)

(147-192)

Bacterial type II and III secretion system protein (Secretin)

(370-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

48.593

100

0.487
  pilQ Vibrio cholerae strain A1552

48.593

100

0.487
  pilQ Vibrio campbellii strain DS40M4

47.145

100

0.481
  pilQ Acinetobacter baumannii strain A118

37.847

100

0.41
  pilQ Acinetobacter baumannii D1279779

37.847

100

0.41
  pilQ Legionella pneumophila strain ERS1305867

40.185

100

0.408
  pilQ Legionella pneumophila strain Lp02

40.074

100

0.406
  pilQ Pseudomonas aeruginosa PAK

39.305

100

0.404
  comQ Acinetobacter baylyi ADP1

36.926

100

0.393
  pilQ Neisseria gonorrhoeae strain FA1090

35.866

100

0.382
  pilQ Neisseria meningitidis MC58

35.063

100

0.368
  pilQ Neisseria meningitidis M1080

35.063

100

0.368

Multiple sequence alignment