Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   AAEY33_RS26880 Genome accession   NZ_CP157082
Coordinates   5471982..5472344 (-) Length   120 a.a.
NCBI ID   WP_141992301.1    Uniprot ID   -
Organism   Peribacillus simplex strain IMGN11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5466982..5477344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEY33_RS26865 (AAEY33_26860) - 5467855..5469471 (-) 1617 WP_098371627.1 ABC transporter substrate-binding protein -
  AAEY33_RS26870 (AAEY33_26865) - 5469514..5470482 (-) 969 WP_098371628.1 dipeptide ABC transporter ATP-binding protein -
  AAEY33_RS26875 (AAEY33_26870) - 5470463..5471467 (-) 1005 WP_185150822.1 ABC transporter ATP-binding protein -
  AAEY33_RS26880 (AAEY33_26875) ssbB 5471982..5472344 (-) 363 WP_141992301.1 single-stranded DNA-binding protein Machinery gene
  AAEY33_RS26885 (AAEY33_26880) - 5472704..5473138 (+) 435 WP_098371631.1 YwpF family protein -
  AAEY33_RS26890 (AAEY33_26885) - 5473252..5473569 (-) 318 WP_347940858.1 hypothetical protein -
  AAEY33_RS26895 (AAEY33_26890) fabZ 5473859..5474287 (-) 429 WP_034315755.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AAEY33_RS26900 (AAEY33_26895) - 5474416..5474652 (-) 237 WP_286201489.1 DNA-directed RNA polymerase subunit beta -
  AAEY33_RS26905 (AAEY33_26900) - 5474839..5475681 (-) 843 WP_347940859.1 flagellar hook-basal body protein -
  AAEY33_RS26910 (AAEY33_26905) - 5475736..5476575 (-) 840 WP_347940860.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13658.54 Da        Isoelectric Point: 9.6262

>NTDB_id=1004034 AAEY33_RS26880 WP_141992301.1 5471982..5472344(-) (ssbB) [Peribacillus simplex strain IMGN11]
MINQVTLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTVGNYEADFVQCIIWKKSAENTAQYCKKGATIGITGRIQTR
RYENQEGKYVYVTEVVAERVQFIGSKQNDVKPKDFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=1004034 AAEY33_RS26880 WP_141992301.1 5471982..5472344(-) (ssbB) [Peribacillus simplex strain IMGN11]
ATGATTAACCAAGTTACCCTCGTCGGCAGACTTACGAAGGATCCCGAATTAAGATACACACCCGATGGCAAGGCTGTTTC
CAATATCACGTTAGCAGTCAACCGGAACTTCCGTAATACTGTCGGTAACTATGAGGCGGACTTCGTACAGTGTATCATAT
GGAAAAAGTCGGCTGAAAATACTGCTCAATATTGTAAAAAAGGTGCAACGATCGGCATAACTGGCAGAATACAAACAAGG
AGATACGAAAATCAGGAGGGCAAATATGTATATGTAACTGAAGTGGTTGCCGAGAGGGTTCAATTCATTGGGTCTAAACA
AAATGATGTTAAGCCCAAAGATTTTGAACATATTGGTTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.526

95

0.575
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

88.333

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

88.333

0.5
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

88.333

0.4
  ssbB/cilA Streptococcus mitis NCTC 12261

43.396

88.333

0.383
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.396

88.333

0.383
  ssbB/cilA Streptococcus mitis SK321

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae Rx1

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae D39

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae R6

42.453

88.333

0.375
  ssbA Streptococcus mutans UA159

42.453

88.333

0.375

Multiple sequence alignment