Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CV024_RS00840 Genome accession   NZ_CP156745
Coordinates   177704..178819 (-) Length   371 a.a.
NCBI ID   WP_100269001.1    Uniprot ID   -
Organism   Vibrio fluvialis strain QY27     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 172704..183819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV024_RS00810 (CV024_00810) hemF 173262..174176 (-) 915 WP_100268998.1 oxygen-dependent coproporphyrinogen oxidase -
  CV024_RS00815 (CV024_00815) - 174196..174753 (-) 558 WP_100268999.1 L-threonylcarbamoyladenylate synthase -
  CV024_RS00820 (CV024_00820) purE 174951..175436 (+) 486 WP_061057039.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  CV024_RS00825 (CV024_00825) - 175440..176573 (+) 1134 WP_100269000.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  CV024_RS00830 (CV024_00830) - 176607..177194 (-) 588 WP_020332564.1 type I DNA topoisomerase -
  CV024_RS00835 (CV024_00835) - 177225..177701 (-) 477 WP_020332565.1 DUF494 family protein -
  CV024_RS00840 (CV024_00840) dprA 177704..178819 (-) 1116 WP_100269001.1 DNA-processing protein DprA Machinery gene
  CV024_RS00845 (CV024_00845) - 178819..179937 (-) 1119 WP_100269002.1 LysM peptidoglycan-binding domain-containing protein -
  CV024_RS00850 (CV024_00850) def 180077..180589 (+) 513 WP_020332568.1 peptide deformylase -
  CV024_RS00855 (CV024_00855) fmt 180608..181555 (+) 948 WP_024374491.1 methionyl-tRNA formyltransferase -
  CV024_RS00860 (CV024_00860) rsmB 181606..182886 (+) 1281 WP_100269003.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40556.02 Da        Isoelectric Point: 6.1271

>NTDB_id=1002437 CV024_RS00840 WP_100269001.1 177704..178819(-) (dprA) [Vibrio fluvialis strain QY27]
MLERDLAAWLAFSFTPQLGIRTLQRLASRYALSDLKQHLNRDGLAVGLKDNQIQYLQRQADQDVDACLRWSDQADNRHIL
TPFHAHYPSLLTEIAAAPPVLFVEGRLEALRAPQIAIVGSRNASIDSQQIAHQFATQLVEHGLVVTSGLALGIDGYAHDG
ALKAGGETIAVLGSGLECIYPARHRALAGRIVDRGALVSEFRPDAKPRPDYFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQSREVFVVPGSIRNPNSLGSNQLIRQGACLVQHVDHILEEVSSLMDWSRNQSQPEQTELFSGTYNEEELPFPEL
LANVGGEATPVDILANRTNIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=1002437 CV024_RS00840 WP_100269001.1 177704..178819(-) (dprA) [Vibrio fluvialis strain QY27]
ATGCTCGAACGCGATCTGGCTGCTTGGCTGGCTTTCAGTTTTACTCCTCAACTCGGTATCCGAACACTACAGCGTTTAGC
CAGTCGTTACGCGCTGTCTGACCTCAAACAACACCTGAATCGTGACGGCTTGGCCGTAGGGCTGAAAGACAACCAGATTC
AGTATTTGCAGCGGCAGGCCGATCAAGACGTCGATGCCTGCCTGCGTTGGAGTGATCAGGCTGATAATCGCCATATTCTG
ACGCCGTTTCATGCGCACTATCCCTCGTTATTGACCGAAATCGCCGCCGCTCCGCCAGTGCTGTTTGTGGAGGGGCGGCT
TGAAGCGCTGCGTGCGCCGCAAATTGCTATCGTCGGCAGTCGCAACGCCAGTATCGACAGTCAGCAAATTGCTCATCAGT
TTGCCACGCAATTGGTTGAACACGGTTTGGTGGTCACCAGTGGTCTGGCGCTTGGTATTGATGGCTACGCGCATGATGGC
GCACTCAAAGCGGGTGGGGAAACTATTGCGGTGCTGGGCTCGGGGCTGGAATGTATTTATCCGGCTCGCCATCGCGCGTT
GGCGGGGCGTATTGTTGACAGAGGCGCCTTGGTGTCGGAATTTCGCCCTGATGCCAAGCCTCGACCTGATTATTTTCCGC
GTCGTAATCGTATTATCAGTGGGTTGTCATTGGGCGTTCTGGTGGTGGAAGCGGCGGAAAAAAGTGGCTCGCTCATCACC
GCGCGTTATGCAGCCGAACAGAGCCGAGAGGTGTTTGTCGTGCCGGGCTCAATTCGCAACCCGAATAGCCTCGGCAGTAA
CCAGTTGATTCGACAAGGGGCGTGTTTGGTACAACACGTCGATCATATTCTCGAAGAAGTCAGCAGTTTGATGGACTGGA
GCCGAAATCAGTCACAACCTGAGCAGACAGAACTTTTTTCTGGCACATATAACGAAGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGGAGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGATGTCATGAT
GCAGCTCCTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

64.42

100

0.644
  dprA Vibrio campbellii strain DS40M4

64.85

98.922

0.642
  dprA Glaesserella parasuis strain SC1401

46.809

100

0.474
  dprA Legionella pneumophila strain ERS1305867

43.132

98.113

0.423
  dprA Neisseria meningitidis MC58

37.437

100

0.402
  dprA Neisseria meningitidis strain C311

37.437

100

0.402
  dprA Neisseria gonorrhoeae MS11

35.93

100

0.385
  dprA Acinetobacter baumannii strain A118

41.935

91.914

0.385
  dprA Acinetobacter baumannii D1279779

41.888

91.375

0.383
  dprA Neisseria gonorrhoeae strain FA1090

35.443

100

0.377
  dprA Acinetobacter baylyi ADP1

41.617

90.027

0.375
  dprA Haemophilus influenzae Rd KW20

48.913

74.394

0.364

Multiple sequence alignment