291233

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 3705490..3706289 Replicon chromosome
Accession NZ_LR890508
Organism Escherichia coli isolate MSB1_9I-sc-2280417

Toxin (Protein)


Gene name yhaV Uniprot ID V0SSH7
Locus tag JMW57_RS17890 Protein ID WP_000347273.1
Coordinates 3705490..3705954 (-) Length 155 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID S1EB98
Locus tag JMW57_RS17895 Protein ID WP_001307405.1
Coordinates 3705954..3706289 (-) Length 112 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JMW57_RS17860 3700491..3700925 - 435 WP_000948824.1 PTS sugar transporter subunit IIA -
JMW57_RS17865 3700943..3701821 - 879 WP_001295548.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
JMW57_RS17870 3701811..3702590 - 780 WP_000406209.1 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC -
JMW57_RS17875 3702601..3703074 - 474 WP_001336162.1 PTS N-acetylgalactosamine transporter subunit IIB -
JMW57_RS17880 3703097..3704377 - 1281 WP_000681920.1 tagatose-bisphosphate aldolase subunit KbaZ -
JMW57_RS17885 3704626..3705435 + 810 WP_000072187.1 aga operon transcriptional regulator AgaR -
JMW57_RS17890 3705490..3705954 - 465 WP_000347273.1 type II toxin-antitoxin system ribonuclease toxin YhaV Toxin
JMW57_RS17895 3705954..3706289 - 336 WP_001307405.1 type II toxin-antitoxin system antitoxin PrlF Antitoxin
JMW57_RS17900 3706438..3708009 - 1572 WP_001273753.1 galactarate dehydratase -
JMW57_RS17905 3708384..3709718 + 1335 WP_000599636.1 galactarate/glucarate/glycerate transporter GarP -
JMW57_RS17910 3709734..3710504 + 771 WP_001058209.1 2-dehydro-3-deoxyglucarate aldolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - - 3705490..3717164 11674


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(12-150)

Antitoxin

PrlF antitoxin

(14-110)


Sequences

Toxin        


Download         Length: 155 a.a.        Molecular weight: 17836.25 Da        Isoelectric Point: 9.6924

>T291233 WP_000347273.1 NZ_LR890508:c3705954-3705490 [Escherichia coli]
MDFPQRVNGWALYAHPCFQETYDALVAEVETLKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKN
KDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWETLTRETEETH

Download         Length: 465 bp

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12358.94 Da        Isoelectric Point: 4.8616

>AT291233 WP_001307405.1 NZ_LR890508:c3706289-3705954 [Escherichia coli]
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
PQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE

Download         Length: 336 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB V0SSH7

Antitoxin

Source ID Structure
AlphaFold DB A0A0E0XVC7

References