113480

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 600576..601375 Replicon chromosome
Accession NZ_CP033250
Organism Escherichia coli strain ECCHD184

Toxin (Protein)


Gene name yhaV Uniprot ID V0SSH7
Locus tag D3W51_RS02895 Protein ID WP_000347273.1
Coordinates 600576..601040 (-) Length 155 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID S1EB98
Locus tag D3W51_RS02900 Protein ID WP_001307405.1
Coordinates 601040..601375 (-) Length 112 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D3W51_RS02865 595579..596013 - 435 WP_000948824.1 PTS sugar transporter subunit IIA -
D3W51_RS02870 596031..596907 - 877 Protein_564 PTS system mannose/fructose/sorbose family transporter subunit IID -
D3W51_RS02875 596897..597676 - 780 WP_122224492.1 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC -
D3W51_RS02880 597687..598160 - 474 WP_001336162.1 PTS N-acetylgalactosamine transporter subunit IIB -
D3W51_RS02885 598183..599463 - 1281 WP_000681920.1 tagatose-bisphosphate aldolase subunit KbaZ -
D3W51_RS02890 599712..600521 + 810 WP_000072187.1 aga operon transcriptional regulator AgaR -
D3W51_RS02895 600576..601040 - 465 WP_000347273.1 type II toxin-antitoxin system ribonuclease toxin YhaV Toxin
D3W51_RS02900 601040..601375 - 336 WP_001307405.1 type II toxin-antitoxin system antitoxin PrlF Antitoxin
D3W51_RS02905 601524..603095 - 1572 WP_122224493.1 galactarate dehydratase -
D3W51_RS02910 603470..604804 + 1335 WP_000599636.1 galactarate/glucarate/glycerate transporter GarP -
D3W51_RS02915 604820..605590 + 771 WP_122224494.1 2-dehydro-3-deoxyglucarate aldolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - - 600576..612250 11674


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(12-150)

Antitoxin

PrlF antitoxin

(14-110)


Sequences

Toxin        


Download         Length: 155 a.a.        Molecular weight: 17836.25 Da        Isoelectric Point: 9.6924

>T113480 WP_000347273.1 NZ_CP033250:c601040-600576 [Escherichia coli]
MDFPQRVNGWALYAHPCFQETYDALVAEVETLKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKN
KDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWETLTRETEETH

Download         Length: 465 bp

>T113480 NZ_CP033250:c601040-600576 [Escherichia coli]
ATGGATTTTCCACAAAGGGTTAATGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTACGACGCTTTAGTTGC
CGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATA
AAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAAT
AAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCAT
TCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGT
TAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGA

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12358.94 Da        Isoelectric Point: 4.8616

>AT113480 WP_001307405.1 NZ_CP033250:c601375-601040 [Escherichia coli]
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
PQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE

Download         Length: 336 bp

>AT113480 NZ_CP033250:c601375-601040 [Escherichia coli]
ATGCCCGCTAATGCTCGCTCTCACGCTGTACTGACCACTGAATCAAAGGTCACGATACGCGGACAAACAACTATCCCCGC
GCCAGTGCGTGAGGCCTTAAAACTGAAGCCAGGCCAGGACAGCATTCATTACGAAATTCTGCCTGGTGGGCAAGTATTTA
TGTGCCGACTGGGAGATGAACAGGAGGATCATACTATGAATGCATTTTTGCGTTTTCTGGATGCAGATATCCAGAACAAC
CCGCAAAAAACTCGTCCATTCAACATTCAACAAGGAAAGAAACTTGTCGCTGGCATGGACGTCAACATTGATGATGAGAT
TGGCGACGACGAATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB V0SSH7

Antitoxin

Source ID Structure
AlphaFold DB A0A0E0XVC7

References