TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | I | ||
Toxin (Protein)
| Predicted family | hokX (T10211) | Predicted domain | - |
| Locus tag | orf988 | Length | 50 a.a. |
| Coordinates | 1059075..1059227 (+) |
Antitoxin (RNA)
| Predicted family | sokX (AT10211) | Predicted domain | - |
| Locus tag | NuclAT_25 | Length | 55 bp |
| Coordinates | 1058981..1059035 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf985 | 1054491..1056290 | + | 1800 | ORF985 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf986 | 1056290..1058002 | + | 1713 | ORF986 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf987 | 1058076..1058810 | + | 735 | ORF987 | Predicted ORF by PRODIGAL Version 1.20 | - |
| - | 1058981..1059035 | - | 168 | - | - | Antitoxin |
| orf988 | 1059075..1059227 | + | 153 | ORF988 | Predicted ORF by PRODIGAL Version 1.20 | Toxin |
| orf989 | 1059422..1062121 | + | 2700 | ORF989 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf990 | 1062219..1063781 | + | 1563 | ORF990 | Predicted ORF by PRODIGAL Version 1.20 | - |
Sequences
Toxin
Download Length: 50 a.a. Molecular weight: 5602.81 Da Isoelectric Point: 7.7899
>ORF988 TA_11 Toxin
MLTKYALVAIIVLCFTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
MLTKYALVAIIVLCFTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
Download Length: 153 bp
>ORF988 TA_11 Toxin
ATGCTGACAAAATATGCCCTTGTGGCAATCATAGTGCTGTGTTTTACAGTACTGGGATTC
ACGCTGATGGTAGGCGACTCGTTGTGTGAGTTGAGTATCAGAGAACGTGGTATGGAGTTT
AAGGCAGTTCTCGCTTACGAATCGAAGAAGTAG
ATGCTGACAAAATATGCCCTTGTGGCAATCATAGTGCTGTGTTTTACAGTACTGGGATTC
ACGCTGATGGTAGGCGACTCGTTGTGTGAGTTGAGTATCAGAGAACGTGGTATGGAGTTT
AAGGCAGTTCTCGCTTACGAATCGAAGAAGTAG
Antitoxin
Download Length: 55 bp
>NuclAT_25 TA_11 Antitoxin
ACAAAAGCCCCAGGCGATATTTCTATCAACCTGAGGCTTACGTTCGAACCCAAAC
ACAAAAGCCCCAGGCGATATTTCTATCAACCTGAGGCTTACGTTCGAACCCAAAC
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| T10211 | E.coli NADPH-sulfite reductase flavoprotein component (cysJ) NADPH-sulfite reductase hemoprotein component (cysI) and 3' |
74 |
100 |
0.74 |
| T10208 | Escherichia coli C |
50 |
100 |
0.5 |
| T6369 | Escherichia coli K-12 |
42.857 |
100 |
0.42 |
| T10210 | Hafnia alvei |
50 |
96.154 |
0.5 |
| T6370 | Escherichia coli |
42 |
100 |
0.42 |
| T6324 | Escherichia coli |
40 |
96.154 |
0.4 |
| T6363 | uncultured bacterium |
40 |
96.154 |
0.4 |
| T10039 | Escherichia coli O157:H7 str. Sakai |
40.426 |
92.157 |
0.38 |
| T10209 | Escherichia coli strain ECOR24 |
39.13 |
92 |
0.36 |
| T10124 | Erwinia amylovora ATCC 49946 |
41.935 |
96.875 |
0.26 |
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|