NZ_LR8904102024652..2034599

MGE detailed information

MGE type: Genomic_island        MGE length: 9948 bp
Accession: NZ_LR890410        Location: 2024652..2034599         Organism: Escherichia coli isolate MSB2_1A-sc-2280429       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JMW04_RS09595 () 2020484..2021815 - 1332 WP_000107723.1 threonine/serine transporter TdcC -
JMW04_RS09600 () 2021837..2022826 - 990 WP_000548347.1 bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB -
JMW04_RS09605 () 2022925..2023863 - 939 WP_000104211.1 transcriptional regulator TdcA -
JMW04_RS09610 () 2024052..2024396 + 345 WP_000145840.1 transcriptional activator TdcR -
JMW04_RS09615 () 2024652..2025191 + 540 WP_000675733.1 hypothetical protein -
JMW04_RS09620 () 2025213..2026400 + 1188 WP_001774050.1 YhaC family protein -
JMW04_RS09630 () 2027423..2028568 - 1146 WP_001300387.1 glycerate 2-kinase -
JMW04_RS09635 () 2028665..2029555 - 891 WP_001303675.1 2-hydroxy-3-oxopropionate reductase -
JMW04_RS09640 () 2029585..2030355 - 771 WP_001058209.1 2-dehydro-3-deoxyglucarate aldolase -
JMW04_RS09645 () 2030371..2031705 - 1335 WP_000599636.1 galactarate/glucarate/glycerate transporter GarP -
JMW04_RS09650 () 2032080..2033651 + 1572 WP_001273752.1 galactarate dehydratase -
JMW04_RS09655 () 2033800..2034135 + 336 WP_001307405.1 type II toxin-antitoxin system antitoxin PrlF Antitoxin Detail
JMW04_RS09660 () 2034135..2034599 + 465 WP_000347275.1 type II toxin-antitoxin system ribonuclease toxin YhaV Toxin Detail
JMW04_RS09665 () 2034654..2035463 - 810 WP_000072187.1 aga operon transcriptional regulator AgaR -
JMW04_RS09670 () 2035712..2036992 + 1281 WP_000681933.1 tagatose-bisphosphate aldolase subunit KbaZ -
JMW04_RS09675 () 2037015..2037488 + 474 WP_001336162.1 PTS N-acetylgalactosamine transporter subunit IIB -
JMW04_RS09680 () 2037499..2038278 + 780 WP_000406209.1 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC -
JMW04_RS09685 () 2038268..2039146 + 879 WP_001295548.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
JMW04_RS09690 () 2039164..2039598 + 435 WP_000948824.1 PTS sugar transporter subunit IIA -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance
Escherichia coli str. K-12 substr. MC4100 Genomic island TA20080 HG738867 3504819..3516493 0.005
Escherichia coli str. K-12 substr. MG1655 Genomic island TA1047 NC_000913 3267854..3277801 0.001
Escherichia coli str. K-12 substr. W3110 Genomic island TA21455 NC_007779 3265982..3277656 0.005
Escherichia coli HS Genomic island TA22436 NC_009800 3314965..3326421 0.008
Escherichia coli str. K-12 substr. DH10B Genomic island TA22703 NC_010473 3363621..3373568 0.001
Escherichia coli BW2952 Genomic island TA23871 NC_012759 3153024..3162971 0.001
Escherichia coli DH1 Genomic island TA27421 NC_017638 3245760..3255707 0.001
Escherichia coli str. K-12 substr. MDS42 Genomic island TA29016 NC_020518 2741187..2751134 0.001
Escherichia coli BW25113 Genomic island TA48700 NZ_CP009273 3261213..3271160 0.001
Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 Genomic island TA68442 NZ_CP017979 3158126..3169800 0.005
Escherichia coli C Genomic island TA75057 NZ_CP020543 640607..652281 0.005
Escherichia coli strain DH5alpha Genomic island TA90495 NZ_CP025520 2121277..2131224 0.001
Escherichia coli str. K-12 substr. MC4100 strain K-12 Genomic island TA285025 NZ_HG738867 3504819..3516493 0.005