MGE detailed information
MGE type: Genomic_island MGE length: 9843 bp
Accession: NZ_LR536430 Location: 1861371..1871213 Organism: Escherichia coli isolate f974b26a-5e81-11e8-bf7f-3c4a9275d6c8 Replicon: chromosome
Accession: NZ_LR536430 Location: 1861371..1871213 Organism: Escherichia coli isolate f974b26a-5e81-11e8-bf7f-3c4a9275d6c8 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4Z69_RS09480 () | 1857203..1858534 | - | 1332 | WP_000107721.1 | threonine/serine transporter TdcC | - |
| E4Z69_RS09485 () | 1858556..1859545 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| E4Z69_RS09490 () | 1859644..1860582 | - | 939 | WP_000104192.1 | transcriptional regulator TdcA | - |
| E4Z69_RS24770 () | 1860897..1861115 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| E4Z69_RS09500 () | 1861371..1861910 | + | 540 | WP_000675733.1 | hypothetical protein | - |
| E4Z69_RS09505 () | 1861932..1863035 | + | 1104 | WP_001488354.1 | YhaC family protein | - |
| E4Z69_RS09515 () | 1864037..1865182 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| E4Z69_RS09520 () | 1865279..1866169 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| E4Z69_RS09525 () | 1866199..1866969 | - | 771 | WP_001058207.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| E4Z69_RS09530 () | 1866985..1868319 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| E4Z69_RS09535 () | 1868694..1870265 | + | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| E4Z69_RS09540 () | 1870414..1870749 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| E4Z69_RS09545 () | 1870749..1871213 | + | 465 | WP_000347264.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| E4Z69_RS09550 () | 1871268..1872077 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| E4Z69_RS09555 () | 1872326..1873606 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| E4Z69_RS09560 () | 1873629..1874102 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| E4Z69_RS09565 () | 1874113..1874892 | + | 780 | WP_000406214.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| E4Z69_RS09570 () | 1874882..1875760 | + | 879 | WP_001300474.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| E4Z69_RS09575 () | 1875778..1876212 | + | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.007 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.006 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.003 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.003 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.003 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.007 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.007 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.007 |