MGE detailed information
MGE type: Genomic_island MGE length: 11563 bp
Accession: NZ_CP121356 Location: 622577..634139 Organism: Escherichia coli strain rl0044 Replicon: chromosome
Accession: NZ_CP121356 Location: 622577..634139 Organism: Escherichia coli strain rl0044 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P9060_RS03020 (617578) | 617578..618012 | - | 435 | WP_000948814.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| P9060_RS03025 (618030) | 618030..618908 | - | 879 | WP_001295548.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| P9060_RS03030 (618898) | 618898..619677 | - | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| P9060_RS03035 (619688) | 619688..620161 | - | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| P9060_RS03040 (620184) | 620184..621464 | - | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| P9060_RS03045 (621713) | 621713..622522 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| P9060_RS03050 (622577) | 622577..623041 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| P9060_RS03055 (623041) | 623041..623376 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| P9060_RS03060 (623525) | 623525..625096 | - | 1572 | WP_001273754.1 | galactarate dehydratase | - |
| P9060_RS03065 (625471) | 625471..626805 | + | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| P9060_RS03070 (626821) | 626821..627591 | + | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| P9060_RS03075 (627621) | 627621..628511 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| P9060_RS03080 (628608) | 628608..629753 | + | 1146 | WP_001297158.1 | glycerate 2-kinase | - |
| P9060_RS03090 (630663) | 630663..631851 | - | 1189 | Protein_605 | YhaC family protein | - |
| P9060_RS03095 (631873) | 631873..632412 | - | 540 | WP_000675734.1 | protein YhaB | - |
| P9060_RS03100 (632668) | 632668..632886 | - | 219 | WP_169001294.1 | transcriptional activator TdcR | - |
| P9060_RS03105 (633201) | 633201..634139 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| P9060_RS03110 (634238) | 634238..635227 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| P9060_RS03115 (635249) | 635249..636580 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| P9060_RS03120 (636606) | 636606..637814 | + | 1209 | WP_001001837.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20042 | CP009789 | 3247092..3263092 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.001 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.001 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.004 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.005 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.006 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.005 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.001 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.001 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.001 |