MGE detailed information
MGE type: Genomic_island MGE length: 9948 bp
Accession: NZ_CP117001 Location: 2411475..2421422 Organism: Escherichia coli strain MLI108K2 Replicon: chromosome
Accession: NZ_CP117001 Location: 2411475..2421422 Organism: Escherichia coli strain MLI108K2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL410_RS13670 (2407307) | 2407307..2408638 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| NL410_RS13675 (2408660) | 2408660..2409649 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| NL410_RS13680 (2409748) | 2409748..2410686 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| NL410_RS13685 (2411001) | 2411001..2411219 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| NL410_RS13690 (2411475) | 2411475..2412014 | + | 540 | WP_000675733.1 | protein YhaB | - |
| NL410_RS13695 (2412036) | 2412036..2413223 | + | 1188 | WP_046464216.1 | YhaC family protein | - |
| NL410_RS13705 (2414246) | 2414246..2415391 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| NL410_RS13710 (2415488) | 2415488..2416378 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| NL410_RS13715 (2416408) | 2416408..2417178 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| NL410_RS13720 (2417194) | 2417194..2418528 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| NL410_RS13725 (2418903) | 2418903..2420474 | + | 1572 | WP_001273752.1 | galactarate dehydratase | - |
| NL410_RS13730 (2420623) | 2420623..2420958 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| NL410_RS13735 (2420958) | 2420958..2421422 | + | 465 | WP_000347275.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| NL410_RS13740 (2421477) | 2421477..2422286 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| NL410_RS13745 (2422535) | 2422535..2423815 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| NL410_RS13750 (2423838) | 2423838..2424311 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| NL410_RS13755 (2424322) | 2424322..2425101 | + | 780 | WP_000406209.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| NL410_RS13760 (2425091) | 2425091..2425969 | + | 879 | WP_001295548.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| NL410_RS13765 (2425987) | 2425987..2426421 | + | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.005 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.001 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.001 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.005 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.005 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.005 |