MGE detailed information
MGE type: Genomic_island MGE length: 9948 bp
Accession: NZ_CP114896 Location: 2730248..2740195 Organism: Escherichia coli strain CM93 Replicon: chromosome
Accession: NZ_CP114896 Location: 2730248..2740195 Organism: Escherichia coli strain CM93 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6117_RS13375 (2726080) | 2726080..2727411 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| O6117_RS13380 (2727433) | 2727433..2728422 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| O6117_RS13385 (2728521) | 2728521..2729459 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| O6117_RS13390 (2729774) | 2729774..2729992 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| O6117_RS13395 (2730248) | 2730248..2730787 | + | 540 | WP_000675733.1 | protein YhaB | - |
| O6117_RS13400 (2730809) | 2730809..2731996 | + | 1188 | WP_000484600.1 | YhaC family protein | - |
| O6117_RS13410 (2733019) | 2733019..2734164 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| O6117_RS13415 (2734261) | 2734261..2735151 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| O6117_RS13420 (2735181) | 2735181..2735951 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| O6117_RS13425 (2735967) | 2735967..2737301 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| O6117_RS13430 (2737676) | 2737676..2739247 | + | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| O6117_RS13435 (2739396) | 2739396..2739731 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| O6117_RS13440 (2739731) | 2739731..2740195 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| O6117_RS13445 (2740250) | 2740250..2741059 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| O6117_RS13450 (2741308) | 2741308..2742588 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| O6117_RS13455 (2742611) | 2742611..2743084 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| O6117_RS13460 (2743095) | 2743095..2743466 | + | 372 | Protein_2625 | PTS sugar transporter subunit IIC | - |
| O6117_RS13465 (2743462) | 2743462..2744019 | + | 558 | Protein_2626 | amidohydrolase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.004 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.004 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.005 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.004 |