MGE detailed information
MGE type: Genomic_island MGE length: 11570 bp
Accession: NZ_CP109924 Location: 642699..654268 Organism: Escherichia coli O125ac:K+:H10 strain C 236-04A Replicon: chromosome
Accession: NZ_CP109924 Location: 642699..654268 Organism: Escherichia coli O125ac:K+:H10 strain C 236-04A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N8A72_RS03090 (637700) | 637700..638134 | - | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| N8A72_RS03095 (638152) | 638152..639030 | - | 879 | WP_001300474.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| N8A72_RS03100 (639020) | 639020..639799 | - | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| N8A72_RS03105 (639810) | 639810..640283 | - | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| N8A72_RS03110 (640306) | 640306..641586 | - | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| N8A72_RS03115 (641835) | 641835..642644 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| N8A72_RS03120 (642699) | 642699..643163 | - | 465 | WP_000347264.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| N8A72_RS03125 (643163) | 643163..643498 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| N8A72_RS03130 (643647) | 643647..645218 | - | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| N8A72_RS03135 (645593) | 645593..646927 | + | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| N8A72_RS03140 (646943) | 646943..647713 | + | 771 | WP_001058207.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| N8A72_RS03145 (647743) | 647743..648633 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| N8A72_RS03150 (648730) | 648730..649875 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| N8A72_RS03160 (650792) | 650792..651980 | - | 1189 | Protein_619 | YhaC family protein | - |
| N8A72_RS03165 (652002) | 652002..652541 | - | 540 | WP_000675733.1 | protein YhaB | - |
| N8A72_RS03170 (652797) | 652797..653015 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| N8A72_RS03175 (653330) | 653330..654268 | + | 939 | WP_000104192.1 | transcriptional regulator TdcA | - |
| N8A72_RS03180 (654367) | 654367..655356 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| N8A72_RS03185 (655378) | 655378..656709 | + | 1332 | WP_000107721.1 | threonine/serine transporter TdcC | - |
| N8A72_RS03190 (656735) | 656735..657943 | + | 1209 | WP_001352528.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.003 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.007 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.003 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.002 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.007 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.007 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.007 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.007 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.007 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.003 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.003 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.003 |