MGE detailed information
MGE type: Genomic_island MGE length: 9948 bp
Accession: NZ_CP104788 Location: 3492367..3502314 Organism: Escherichia coli strain SHP24 Replicon: chromosome
Accession: NZ_CP104788 Location: 3492367..3502314 Organism: Escherichia coli strain SHP24 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N6H17_RS17190 (3488199) | 3488199..3489530 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| N6H17_RS17195 (3489552) | 3489552..3490541 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| N6H17_RS17200 (3490640) | 3490640..3491578 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| N6H17_RS17205 (3491893) | 3491893..3492111 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| N6H17_RS17210 (3492367) | 3492367..3492906 | + | 540 | WP_000675733.1 | protein YhaB | - |
| N6H17_RS17215 (3492928) | 3492928..3494115 | + | 1188 | WP_061349435.1 | YhaC family protein | - |
| N6H17_RS17225 (3495138) | 3495138..3496283 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| N6H17_RS17230 (3496380) | 3496380..3497270 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| N6H17_RS17235 (3497300) | 3497300..3498070 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| N6H17_RS17240 (3498086) | 3498086..3499420 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| N6H17_RS17245 (3499795) | 3499795..3501366 | + | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| N6H17_RS17250 (3501515) | 3501515..3501850 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| N6H17_RS17255 (3501850) | 3501850..3502314 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| N6H17_RS17260 (3502369) | 3502369..3503178 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| N6H17_RS17265 (3503427) | 3503427..3504707 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| N6H17_RS17270 (3504730) | 3504730..3505203 | + | 474 | WP_001422480.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| N6H17_RS17275 (3505214) | 3505214..3505993 | + | 780 | WP_000406209.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| N6H17_RS17280 (3505983) | 3505983..3506861 | + | 879 | WP_001295548.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| N6H17_RS17285 (3506879) | 3506879..3507313 | + | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.004 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.004 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.005 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.004 |