MGE detailed information
MGE type: Genomic_island MGE length: 12458 bp
Accession: NZ_CP089142 Location: 640622..653079 Organism: Escherichia coli strain XD35 Replicon: chromosome
Accession: NZ_CP089142 Location: 640622..653079 Organism: Escherichia coli strain XD35 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K0768_RS06445 (635623) | 635623..636057 | - | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| K0768_RS06450 (636075) | 636075..636953 | - | 879 | WP_001295548.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| K0768_RS06455 (636943) | 636943..637722 | - | 780 | WP_000406209.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| K0768_RS06460 (637733) | 637733..638206 | - | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| K0768_RS06465 (638229) | 638229..639509 | - | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| K0768_RS06470 (639758) | 639758..640567 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| K0768_RS06475 (640622) | 640622..641086 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| K0768_RS06480 (641086) | 641086..641421 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| K0768_RS06485 (641570) | 641570..643141 | - | 1572 | WP_063084662.1 | galactarate dehydratase | - |
| K0768_RS06490 (643516) | 643516..644850 | + | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| K0768_RS06495 (644866) | 644866..645636 | + | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| K0768_RS06500 (645666) | 645666..646556 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| K0768_RS06505 (646653) | 646653..647798 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| K0768_RS06515 (648821) | 648821..649117 | - | 297 | Protein_620 | hypothetical protein | - |
| K0768_RS06525 (649886) | 649886..650791 | - | 906 | Protein_622 | hypothetical protein | - |
| K0768_RS06530 (650813) | 650813..651352 | - | 540 | WP_000675733.1 | protein YhaB | - |
| K0768_RS06535 (651608) | 651608..651826 | - | 219 | WP_213059370.1 | transcriptional activator TdcR | - |
| K0768_RS06540 (652141) | 652141..653079 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| K0768_RS06545 (653178) | 653178..654167 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| K0768_RS06550 (654189) | 654189..655520 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| K0768_RS06555 (655546) | 655546..656754 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20042 | CP009789 | 3247092..3263092 | 0.01 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.002 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.002 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.005 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.006 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.006 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.006 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.006 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.002 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.002 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.002 |