MGE detailed information
MGE type: Genomic_island MGE length: 11675 bp
Accession: NZ_CP086510 Location: 611442..623116 Organism: Escherichia coli strain Ec-050-T0 Replicon: chromosome
Accession: NZ_CP086510 Location: 611442..623116 Organism: Escherichia coli strain Ec-050-T0 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNN50_RS02940 (606443) | 606443..606877 | - | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| LNN50_RS02945 (606895) | 606895..607773 | - | 879 | WP_001295548.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| LNN50_RS02950 (607763) | 607763..608542 | - | 780 | WP_000406209.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| LNN50_RS02955 (608553) | 608553..609026 | - | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| LNN50_RS02960 (609049) | 609049..610329 | - | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| LNN50_RS02965 (610578) | 610578..611387 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| LNN50_RS02970 (611442) | 611442..611906 | - | 465 | WP_000347275.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| LNN50_RS02975 (611906) | 611906..612241 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| LNN50_RS02980 (612390) | 612390..613961 | - | 1572 | WP_001273752.1 | galactarate dehydratase | - |
| LNN50_RS02985 (614336) | 614336..615670 | + | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| LNN50_RS02990 (615686) | 615686..616456 | + | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| LNN50_RS02995 (616486) | 616486..617376 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| LNN50_RS03000 (617473) | 617473..618618 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| LNN50_RS03010 (619641) | 619641..620828 | - | 1188 | WP_000484594.1 | YhaC family protein | - |
| LNN50_RS03015 (620850) | 620850..621389 | - | 540 | WP_000675733.1 | protein YhaB | - |
| LNN50_RS03020 (621645) | 621645..621863 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| LNN50_RS03025 (622178) | 622178..623116 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| LNN50_RS03030 (623215) | 623215..624204 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| LNN50_RS03035 (624226) | 624226..625557 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| LNN50_RS03040 (625583) | 625583..626791 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20042 | CP009789 | 3247092..3263092 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.001 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.001 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.003 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.005 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.005 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.005 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.001 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.001 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.005 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.001 |