MGE detailed information
MGE type: Genomic_island MGE length: 9948 bp
Accession: NZ_CP085060 Location: 4016929..4026876 Organism: Escherichia coli strain P30_L1_05.20 Replicon: chromosome
Accession: NZ_CP085060 Location: 4016929..4026876 Organism: Escherichia coli strain P30_L1_05.20 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LH369_RS19285 (4012761) | 4012761..4014092 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| LH369_RS19290 (4014114) | 4014114..4015103 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| LH369_RS19295 (4015202) | 4015202..4016140 | - | 939 | WP_000104207.1 | transcriptional regulator TdcA | - |
| LH369_RS19300 (4016455) | 4016455..4016673 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| LH369_RS19305 (4016929) | 4016929..4017468 | + | 540 | WP_000675733.1 | protein YhaB | - |
| LH369_RS19310 (4017490) | 4017490..4018677 | + | 1188 | WP_000484594.1 | YhaC family protein | - |
| LH369_RS19320 (4019700) | 4019700..4020845 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| LH369_RS19325 (4020942) | 4020942..4021832 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| LH369_RS19330 (4021862) | 4021862..4022632 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| LH369_RS19335 (4022648) | 4022648..4023982 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| LH369_RS19340 (4024357) | 4024357..4025928 | + | 1572 | WP_001273752.1 | galactarate dehydratase | - |
| LH369_RS19345 (4026077) | 4026077..4026412 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| LH369_RS19350 (4026412) | 4026412..4026876 | + | 465 | WP_000347275.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| LH369_RS19355 (4026931) | 4026931..4027740 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| LH369_RS19360 (4027989) | 4027989..4029269 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| LH369_RS19365 (4029292) | 4029292..4029765 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| LH369_RS19370 (4029776) | 4029776..4030555 | + | 780 | WP_000406209.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| LH369_RS19375 (4030545) | 4030545..4031423 | + | 879 | WP_001295548.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| LH369_RS19380 (4031441) | 4031441..4031875 | + | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.005 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.001 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.001 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.005 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.005 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.005 |